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alnscore.c File Reference

#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "clustalw.h"

Defines

#define MAX(a, b)   ((a)>(b)?(a):(b))
#define MIN(a, b)   ((a)<(b)?(a):(b))

Functions

static sint count_gaps (sint s1, sint s2, sint l)
void aln_score (void)

Variables

float gap_open
sint nseqs
sint * seqlen_array
short blosum45mt []
short def_aa_xref []
sint debug
sint max_aa
char ** seq_array

Define Documentation

#define MAX a,
 )     ((a)>(b)?(a):(b))
 

#define MIN a,
 )     ((a)<(b)?(a):(b))
 


Function Documentation

void aln_score void   ) 
 

static sint count_gaps sint  s1,
sint  s2,
sint  l
[static]
 


Variable Documentation

short blosum45mt[]
 

sint debug
 

short def_aa_xref[]
 

float gap_open
 

sint max_aa
 

sint nseqs
 

char** seq_array
 

sint* seqlen_array
 


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