alnscore.cpp File Reference

#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "clustalw.h"

Defines
#define	MAX(a, b)   ((a)>(b)?(a):(b))
#define	MIN(a, b)   ((a)<(b)?(a):(b))
Functions
static sint	count_gaps (sint s1, sint s2, sint l)
void	aln_score (void)
Variables
float	gap_open
sint	nseqs
sint *	seqlen_array
short	blosum45mt []
short	def_aa_xref []
sint	debug
sint	max_aa
char **	seq_array

---

Define Documentation

#define MAX (  a, b   )     ((a)>(b)?(a):(b))

#define MIN (  a, b   )     ((a)<(b)?(a):(b))

---

Function Documentation

void aln_score (  void   )

static sint count_gaps (  sint  s1, sint  s2, sint  l )  [static]

---

Variable Documentation

short blosum45mt[]

sint debug

short def_aa_xref[]

float gap_open

sint max_aa

sint nseqs

char** seq_array

sint* seqlen_array

---