EIpanel Class Reference

The External Interface panel class. More...

#include <ExternalInterface.h>

List of all members.

Public Member Functions
	EIpanel (wxWindow *parent, int _mode)
	Constructor.
virtual void	process ()
	Runs the query, as process_blast or process_ncbi.
virtual wxString	num2html (int num, int digits)
	Returns a HTML-formatted number.
void	showMessage (wxString msg)
	Displays a message beneath the search controls.
virtual void	init_blast ()
	Initialized BLAST interface.
virtual void	process_blast ()
	Processes BLAST command, starts thread.
virtual void	process_blast2 ()
	Processes thread results.
virtual void	execute_blast_b3 ()
	Opens the associated link.
virtual void	execute_blast ()
	Opens returned BLAST entry.
virtual wxString	blast_align (wxString qseq, wxString mseq, wxString hseq, int cpl, int qoff, int hoff)
virtual void	init_ncbi ()
	Initializes NCBI interface.
virtual void	process_ncbi ()
	Processes NCBI request.
virtual void	execute_ncbi ()
	Opens returned sequence entry.
virtual void	execute_ncbi_b3 ()
	Opens the associated link.
virtual void	execute_ncbi_load (wxString database)
	Load a sequence from NCBI.
virtual void	OnB1 (wxCommandEvent &WXUNUSED(event))
	Button 1 handler.
virtual void	OnB2 (wxCommandEvent &WXUNUSED(event))
	Button 2 handler.
virtual void	OnB3 (wxCommandEvent &WXUNUSED(event))
	Button 3 handler.
virtual void	OnBlast (wxCommandEvent &WXUNUSED(event))
	"Run BLAST" event handler
virtual void	OnBnext (wxCommandEvent &WXUNUSED(event))
	"Next" event handler
virtual void	OnC1 (wxCommandEvent &WXUNUSED(event))
	Choice box 1 event handler.
virtual void	OnLboxDClick (wxCommandEvent &WXUNUSED(event))
	List box double click event handler.
virtual wxString	val (TiXmlNode *n)
	Return safe value.
virtual wxString	valFC (TiXmlNode *n)
	Return value of FirstChild.
Public Attributes
int	mode
wxPanel *	up
EILB *	hlb
wxBoxSizer *	v0
wxBoxSizer *	v1
wxBoxSizer *	h0
wxBoxSizer *	h1
wxTextCtrl *	t1
wxTextCtrl *	t2
wxTextCtrl *	t3
wxTextCtrl *	t4
wxStaticText *	st_msg
wxButton *	b1
wxButton *	b2
wxButton *	b3
wxButton *	b_last
wxButton *	b_next
wxChoice *	c1
wxChoice *	c2
long	res_count
long	res_start
long	RETMAX
blastThread *	blast_thread
wxString	blast_res

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Detailed Description

The External Interface panel class.

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Constructor & Destructor Documentation

EIpanel::EIpanel (  wxWindow *  parent, int  _mode )

Constructor.

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Member Function Documentation

wxString EIpanel::blast_align (  wxString  qseq, wxString  mseq, wxString  hseq, int  cpl, int  qoff, int  hoff )  [virtual]

void EIpanel::execute_blast (   )  [virtual]

Opens returned BLAST entry.

void EIpanel::execute_blast_b3 (   )  [virtual]

Opens the associated link.

void EIpanel::execute_ncbi (   )  [virtual]

Opens returned sequence entry.

void EIpanel::execute_ncbi_b3 (   )  [virtual]

Opens the associated link.

void EIpanel::execute_ncbi_load (  wxString  database  )  [virtual]

Load a sequence from NCBI.

void EIpanel::init_blast (   )  [virtual]

Initialized BLAST interface.

void EIpanel::init_ncbi (   )  [virtual]

Initializes NCBI interface.

wxString EIpanel::num2html (  int  num, int  digits )  [virtual]

Returns a HTML-formatted number.

virtual void EIpanel::OnB1 (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Button 1 handler.

virtual void EIpanel::OnB2 (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Button 2 handler.

virtual void EIpanel::OnB3 (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Button 3 handler.

virtual void EIpanel::OnBlast (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

"Run BLAST" event handler

virtual void EIpanel::OnBnext (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

"Next" event handler

virtual void EIpanel::OnC1 (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Choice box 1 event handler.

virtual void EIpanel::OnLboxDClick (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

List box double click event handler.

void EIpanel::process (   )  [virtual]

Runs the query, as process_blast or process_ncbi.

void EIpanel::process_blast (   )  [virtual]

Processes BLAST command, starts thread.

void EIpanel::process_blast2 (   )  [virtual]

Processes thread results.

void EIpanel::process_ncbi (   )  [virtual]

Processes NCBI request.

void EIpanel::showMessage (  wxString  msg  )

Displays a message beneath the search controls.

wxString EIpanel::val (  TiXmlNode *  n  )  [virtual]

Return safe value.

wxString EIpanel::valFC (  TiXmlNode *  n  )  [virtual]

Return value of FirstChild.

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Member Data Documentation

wxButton* EIpanel::b1

wxButton * EIpanel::b2

wxButton * EIpanel::b3

wxButton * EIpanel::b_last

wxButton * EIpanel::b_next

wxString EIpanel::blast_res

blastThread* EIpanel::blast_thread

wxChoice* EIpanel::c1

wxChoice * EIpanel::c2

wxBoxSizer * EIpanel::h0

wxBoxSizer * EIpanel::h1

EILB* EIpanel::hlb

int EIpanel::mode

long EIpanel::res_count

long EIpanel::res_start

long EIpanel::RETMAX

wxStaticText* EIpanel::st_msg

wxTextCtrl* EIpanel::t1

wxTextCtrl * EIpanel::t2

wxTextCtrl * EIpanel::t3

wxTextCtrl * EIpanel::t4

wxPanel* EIpanel::up

wxBoxSizer* EIpanel::v0

wxBoxSizer * EIpanel::v1

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/ExternalInterface.h
• C:/Programme/Dev-Cpp/Mine/GENtle/ExternalBLAST.cpp
• C:/Programme/Dev-Cpp/Mine/GENtle/ExternalInterface.cpp
• C:/Programme/Dev-Cpp/Mine/GENtle/ExternalNCBI.cpp

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