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SeqABI Class Reference

Sequence display class showing ABI sequencer peaks. More...

#include <SequenceCanvas.h>

Inheritance diagram for SeqABI:

SeqDNA SeqBasic List of all members.

Public Member Functions

 SeqABI (SequenceCanvas *ncan=NULL)
 Constructor.
virtual ~SeqABI ()
 Destructor.
virtual int arrange (int n)
 Arrange "chars" as line n.
virtual void show (wxDC &dc)
 Show.
virtual void initFromFile (wxString filename)
 Setup sequence from ABI file.
virtual wxString whatsthis ()
 Returns the linetype.
virtual void drawTopLine (wxDC &dc, int y)
 Some layout thingy.
virtual wxColor getBaseColor (char b)
 Returns the color to draw the base in.
virtual void setInvCompl (bool x)
 Display inverse/complement sequence.
virtual int arrange_direct (int n)
 Arrange quickly (bypassing SeqPos).
virtual void show_direct (wxDC &dc)
 Show quickly.
virtual bool useDirectRoutines ()
 Do we draw directly (or do we use SeqPos)?

Public Attributes

ABItype * at
 Pointer to the calling ABI module.
int minx
int maxx
int scalex
char base2color [4]
wxColour colors [4]
bool showHelpLines
 Do we show these little grey helper lines?
int screenScale
int zoom
 Zoom factor.
bool inv_compl
 Use inverse/complement?
long view_from
long view_to

Private Member Functions

int get_bx (int id, int idx)

Private Attributes

int strange_compensation_factor

Detailed Description

Sequence display class showing ABI sequencer peaks.

Constructor & Destructor Documentation

SeqABI::SeqABI (  SequenceCanvas *  ncan = NULL  )  [inline]
 

Constructor.

SeqABI::~SeqABI (   )  [virtual]
 

Destructor.

Member Function Documentation

int SeqABI::arrange (  int  n  )  [virtual]
 

Arrange "chars" as line n.

Reimplemented from SeqDNA.

virtual int SeqABI::arrange_direct (  int  n  )  [inline, virtual]
 

Arrange quickly (bypassing SeqPos).

Reimplemented from SeqDNA.

void SeqABI::drawTopLine (  wxDC &  dc,
int  y
)  [virtual]
 

Some layout thingy.

int SeqABI::get_bx (  int  id,
int  idx
)  [private]
 

wxColor SeqABI::getBaseColor (  char  b  )  [virtual]
 

Returns the color to draw the base in.

Reimplemented from SeqDNA.

void SeqABI::initFromFile (  wxString  filename  )  [virtual]
 

Setup sequence from ABI file.

void SeqABI::setInvCompl (  bool  x  )  [virtual]
 

Display inverse/complement sequence.

void SeqABI::show (  wxDC &  dc  )  [virtual]
 

Show.

Reimplemented from SeqDNA.

virtual void SeqABI::show_direct (  wxDC &  dc  )  [inline, virtual]
 

Show quickly.

Reimplemented from SeqDNA.

virtual bool SeqABI::useDirectRoutines (   )  [inline, virtual]
 

Do we draw directly (or do we use SeqPos)?

Reimplemented from SeqDNA.

virtual wxString SeqABI::whatsthis (   )  [inline, virtual]
 

Returns the linetype.

Reimplemented from SeqDNA.

Member Data Documentation

ABItype* SeqABI::at
 

Pointer to the calling ABI module.

char SeqABI::base2color[4]
 

wxColour SeqABI::colors[4]
 

bool SeqABI::inv_compl
 

Use inverse/complement?

int SeqABI::maxx
 

int SeqABI::minx
 

int SeqABI::scalex
 

int SeqABI::screenScale
 

bool SeqABI::showHelpLines
 

Do we show these little grey helper lines?

int SeqABI::strange_compensation_factor [private]
 

long SeqABI::view_from
 

long SeqABI::view_to
 

int SeqABI::zoom
 

Zoom factor.

The documentation for this class was generated from the following files:
Generated on Fri Aug 11 16:19:45 2006 for GENtle by  doxygen 1.4.1