SeqDNA Class Reference

Sequence display class showing DNA. More...

#include <SequenceCanvas.h>

Inheritance diagram for SeqDNA:

List of all members.

Public Member Functions
	SeqDNA (SequenceCanvas *ncan=NULL)
	Constructor.
virtual int	arrange (int n)
	Arrange "chars" as line n.
virtual void	show (wxDC &dc)
	Arrange "chars" as line n.
virtual void	initFromTVector (TVector *v)
	Set from a TVector class.
virtual wxString	whatsthis ()
	Returns the linetype.
virtual wxPoint	showText (int ystart, wxArrayString &tout)
	Show as text (rarely used).
virtual wxColor	getBaseColor (char b)
	Returns the color to draw a base/nucleotide in.
virtual int	arrange_direct (int n)
	Arrange quickly (bypassing SeqPos).
virtual void	show_direct (wxDC &dc)
	Show quickly.
virtual void	makeEndnumberLength ()
	Calculates the width needed for the leading numbers.
virtual bool	useDirectRoutines ()
	Do we draw directly (or do we use SeqPos)?
virtual int	getMarkSize ()
	Returns the length of the SeqPos marked part of the sequence.
virtual int	getRectSize ()
	Returns the number of SeqPos rectangles.
virtual wxRect	getRect (int i)
	Returns the SeqPos rect for a "char".
virtual int	getMark (int i)
	Returns the mark value for a "char".
virtual void	setMark (int i, int v)
	Sets the marking of a "char".
virtual int	getPos (int i)
	Returns the internal ID of the "char".
virtual void	setPos (int i, int v)
	Sets the internal ID of the "char".
virtual int	getLine (int y)
	Returns the line number for the y position.
virtual int	getItem (wxPoint pt, int line)
	Returns the "char" at that position.
Public Attributes
TVector *	vec
	Pointer to the vector containing the DNA sequence.
bool	showNumbers
	Show leading numbers? (Not for IDNA, for example).
wxColour	fontColor
	The default font color.
wxString	alternateName
	An alternate name, to display instead of the leading numbers.
bool	invers
	This sequence is inverse DNA.

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Detailed Description

Sequence display class showing DNA.

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Constructor & Destructor Documentation

SeqDNA::SeqDNA (  SequenceCanvas *  ncan = NULL  )  [inline]

Constructor.

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Member Function Documentation

int SeqDNA::arrange (  int  n  )  [virtual]

Arrange "chars" as line n. Reimplemented from SeqBasic. Reimplemented in SeqABI, and SeqPlot.

int SeqDNA::arrange_direct (  int  n  )  [virtual]

Arrange quickly (bypassing SeqPos). Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqABI, SeqFeature, and SeqPlot.

wxColor SeqDNA::getBaseColor (  char  b  )  [virtual]

Returns the color to draw a base/nucleotide in. Reimplemented in SeqABI.

int SeqDNA::getItem (  wxPoint  pt, int  line )  [virtual]

Returns the "char" at that position. Reimplemented from SeqBasic.

int SeqDNA::getLine (  int  y  )  [virtual]

Returns the line number for the y position. Reimplemented from SeqBasic.

int SeqDNA::getMark (  int  i  )  [virtual]

Returns the mark value for a "char". Reimplemented from SeqBasic.

int SeqDNA::getMarkSize (   )  [virtual]

Returns the length of the SeqPos marked part of the sequence. Reimplemented from SeqBasic.

int SeqDNA::getPos (  int  i  )  [virtual]

Returns the internal ID of the "char". Reimplemented from SeqBasic.

wxRect SeqDNA::getRect (  int  i  )  [virtual]

Returns the SeqPos rect for a "char". Reimplemented from SeqBasic.

int SeqDNA::getRectSize (   )  [virtual]

Returns the number of SeqPos rectangles. Reimplemented from SeqBasic.

void SeqDNA::initFromTVector (  TVector *  v  )  [virtual]

Set from a TVector class. Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqFeature, and SeqPlot.

void SeqDNA::makeEndnumberLength (   )  [virtual]

Calculates the width needed for the leading numbers. Reimplemented from SeqBasic.

void SeqDNA::setMark (  int  i, int  v )  [virtual]

Sets the marking of a "char". Reimplemented from SeqBasic.

void SeqDNA::setPos (  int  i, int  v )  [virtual]

Sets the internal ID of the "char". Reimplemented from SeqBasic.

void SeqDNA::show (  wxDC &  dc  )  [virtual]

Arrange "chars" as line n. Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqABI, SeqFeature, and SeqPlot.

void SeqDNA::show_direct (  wxDC &  dc  )  [virtual]

Show quickly. Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqABI, SeqFeature, and SeqPlot.

wxPoint SeqDNA::showText (  int  ystart, wxArrayString &  tout )  [virtual]

Show as text (rarely used). Reimplemented from SeqBasic.

bool SeqDNA::useDirectRoutines (   )  [virtual]

Do we draw directly (or do we use SeqPos)? Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqABI, SeqFeature, and SeqPlot.

virtual wxString SeqDNA::whatsthis (   )  [inline, virtual]

Returns the linetype. Reimplemented from SeqBasic. Reimplemented in SeqPrimer, SeqABI, SeqFeature, and SeqPlot.

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Member Data Documentation

wxString SeqDNA::alternateName

An alternate name, to display instead of the leading numbers.

wxColour SeqDNA::fontColor

The default font color.

bool SeqDNA::invers

This sequence is inverse DNA.

bool SeqDNA::showNumbers

Show leading numbers? (Not for IDNA, for example).

TVector* SeqDNA::vec

Pointer to the vector containing the DNA sequence.

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceCanvas.h
• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceTypeDNA.cpp

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