SeqFeature Class Reference

Sequence display class showing annotated features. More...

#include <SequenceCanvas.h>

Inheritance diagram for SeqFeature:


Public Member Functions
	SeqFeature (SequenceCanvas *ncan=NULL)
	Constructor.
virtual void	show (wxDC &dc)
	Show.
virtual wxString	whatsthis ()
	Returns the linetype.
virtual void	initFromTVector (TVector *v)
	Set from a TVector class.
virtual bool	collide (int a, int b)
	Do features a and #b overlap?
virtual bool	doesHit (int a, int x)
	Is position x within feature a.
virtual int	arrange_direct (int n)
	Arrange quickly (bypassing SeqPos).
virtual void	show_direct (wxDC &dc)
	Show quickly.
virtual bool	useDirectRoutines ()
	Do we draw directly (or do we use SeqPos)?
virtual bool	isDisplayOnly ()
	WTF??
Public Attributes
vector< wxRect >	vr
vector< wxPen >	pens
	Different pens (colors) to use.
int	maxlayers
	Number of layers/levels.
SeqAA *	aaa
	Pointer to the associated amino acid sequence.
int	id
	Only used by TAlignment : lines[id].
SequencePartList	pl
	List of (overlapping?) parts.

Detailed Description

Sequence display class showing annotated features.

SeqFeature::SeqFeature ( SequenceCanvas * ncan = NULL ) [inline]

Constructor.

virtual int SeqFeature::arrange_direct ( int n ) [inline, virtual]

Arrange quickly (bypassing SeqPos).

Reimplemented from SeqDNA.

bool SeqFeature::collide ( int a,

int b

) [virtual]

Do features a and #b overlap?

bool SeqFeature::doesHit ( int a,

int x

) [virtual]

Is position x within feature a.

void SeqFeature::initFromTVector ( TVector * v ) [virtual]

Set from a TVector class.

Reimplemented from SeqDNA.

virtual bool SeqFeature::isDisplayOnly ( ) [inline, virtual]

WTF??

Reimplemented from SeqBasic.

void SeqFeature::show ( wxDC & dc ) [virtual]

Show.

Reimplemented from SeqDNA.

virtual void SeqFeature::show_direct ( wxDC & dc ) [inline, virtual]

Show quickly.

Reimplemented from SeqDNA.

virtual bool SeqFeature::useDirectRoutines ( ) [inline, virtual]

Do we draw directly (or do we use SeqPos)?

Reimplemented from SeqDNA.

virtual wxString SeqFeature::whatsthis ( ) [inline, virtual]

Returns the linetype.

Reimplemented from SeqDNA.

SeqAA* SeqFeature::aaa

Pointer to the associated amino acid sequence.

int SeqFeature::id

Only used by TAlignment : lines[id].

int SeqFeature::maxlayers

Number of layers/levels.

vector<wxPen> SeqFeature::pens

Different pens (colors) to use.

SequencePartList SeqFeature::pl

List of (overlapping?) parts.

vector<wxRect> SeqFeature::vr

The documentation for this class was generated from the following files:

Generated on Fri Aug 11 16:19:45 2006 for GENtle by

1.4.1