SeqPlot Class Reference

Sequence display class showing plot data in the amino acid module. More...

#include <SequenceCanvas.h>

Inheritance diagram for SeqPlot:

List of all members.

Public Member Functions
	SeqPlot (SequenceCanvas *ncan=NULL)
	Constructor.
virtual void	show (wxDC &dc)
	Show.
virtual wxString	whatsthis ()
	Returns the linetype.
virtual void	initFromTVector (TVector *v)
	Set from a TVector class.
virtual int	arrange (int n)
	Arrange "chars" as line n.
virtual void	setLines (int l)
	What line(s) this spans.
virtual void	useChouFasman ()
	Chou-Fasman-Plot.
virtual void	useNcoils ()
	Coiled-coil-Plot.
virtual void	useMW ()
	Molecular weight plot.
virtual void	usePI ()
	Isoelectric point plot.
virtual void	useHP ()
	Hydrophobicity plot.
virtual void	showPlot (wxDC &dc, int b, int tx, int ty, int lx, int ph)
	Draws the plot.
virtual void	init (SequenceCanvas *ncan=NULL)
	Initialization.
virtual wxString	getTip (int pos)
	Returns the tooltip text for this position in the sequence.
virtual int	arrange_direct (int n)
	Arrange quickly (bypassing SeqPos).
virtual void	show_direct (wxDC &dc)
	Show quickly.
virtual bool	useDirectRoutines ()
	Do we draw directly (or do we use SeqPos)?
Private Types
enum	{   CHOU_FASMAN, P_I, M_W, H_P,   COILED_COIL }
Private Member Functions
virtual void	scanMinMax ()
	Determine minimum/maximum values.
virtual void	scanChouFasman (int x, int y, int t, int min, int seek_cnt, int seek_avg, int avg)
virtual void	drawSymbol (char c, wxDC &dc, int x1, int y1, int x2, int y2)
virtual void	showChouFasman (wxDC &dc, int b, int tx, int ty, int lx)
	Display Chou-Fasman.
virtual void	showNcoils (wxDC &dc, int b, int tx, int ty, int lx)
	Display Coiled-coil.
virtual void	showMW (wxDC &dc, int b, int tx, int ty, int lx)
	Display molecular weight.
virtual void	showPI (wxDC &dc, int b, int tx, int ty, int lx)
	Display isoelectric point.
virtual void	showHP (wxDC &dc, int b, int tx, int ty, int lx)
	Display hydrophobicity.
virtual void	fixMinMax (float &f)
	What the hell does this do??
virtual void	drawDottedLine (wxDC &dc, int x1, int y1, int x2, int y2)
	Draws a horizontal/vertical helper line.
virtual void	myRect (wxDC &dc, int x, int y, int w, int h)
	Draws a "special" rectangle.
Private Attributes
enum SeqPlot:: { ... }	type
int	lines
int	l_top
int	l_bottom
wxArrayString	d1
wxArrayString	d2
wxArrayString	d3
vector< TAAProp >	prop
bool	startOfLine
float	data_max
float	data_min
float	data_h
float	data_step
wxRect	plotr
int	hp_window
wxString	hp_method

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Detailed Description

Sequence display class showing plot data in the amino acid module.

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Member Enumeration Documentation

anonymous enum [private]

Enumeration values: CHOU_FASMAN  P_I  M_W  H_P  COILED_COIL

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Constructor & Destructor Documentation

SeqPlot::SeqPlot (  SequenceCanvas *  ncan = NULL  )  [inline]

Constructor.

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Member Function Documentation

int SeqPlot::arrange (  int  n  )  [virtual]

Arrange "chars" as line n. Reimplemented from SeqDNA.

virtual int SeqPlot::arrange_direct (  int  n  )  [inline, virtual]

Arrange quickly (bypassing SeqPos). Reimplemented from SeqDNA.

void SeqPlot::drawDottedLine (  wxDC &  dc, int  x1, int  y1, int  x2, int  y2 )  [private, virtual]

Draws a horizontal/vertical helper line.

void SeqPlot::drawSymbol (  char  c, wxDC &  dc, int  x1, int  y1, int  x2, int  y2 )  [private, virtual]

void SeqPlot::fixMinMax (  float &  f  )  [private, virtual]

What the hell does this do??

wxString SeqPlot::getTip (  int  pos  )  [virtual]

Returns the tooltip text for this position in the sequence.

void SeqPlot::init (  SequenceCanvas *  ncan = NULL  )  [virtual]

Initialization. Reimplemented from SeqBasic.

void SeqPlot::initFromTVector (  TVector *  v  )  [virtual]

Set from a TVector class. Reimplemented from SeqDNA.

void SeqPlot::myRect (  wxDC &  dc, int  x, int  y, int  w, int  h )  [private, virtual]

Draws a "special" rectangle.

void SeqPlot::scanChouFasman (  int  x, int  y, int  t, int  min, int  seek_cnt, int  seek_avg, int  avg )  [private, virtual]

void SeqPlot::scanMinMax (   )  [private, virtual]

Determine minimum/maximum values.

void SeqPlot::setLines (  int  l  )  [virtual]

What line(s) this spans.

void SeqPlot::show (  wxDC &  dc  )  [virtual]

Show. Reimplemented from SeqDNA.

virtual void SeqPlot::show_direct (  wxDC &  dc  )  [inline, virtual]

Show quickly. Reimplemented from SeqDNA.

void SeqPlot::showChouFasman (  wxDC &  dc, int  b, int  tx, int  ty, int  lx )  [private, virtual]

Display Chou-Fasman.

void SeqPlot::showHP (  wxDC &  dc, int  b, int  tx, int  ty, int  lx )  [private, virtual]

Display hydrophobicity.

void SeqPlot::showMW (  wxDC &  dc, int  b, int  tx, int  ty, int  lx )  [private, virtual]

Display molecular weight.

void SeqPlot::showNcoils (  wxDC &  dc, int  b, int  tx, int  ty, int  lx )  [private, virtual]

Display Coiled-coil.

void SeqPlot::showPI (  wxDC &  dc, int  b, int  tx, int  ty, int  lx )  [private, virtual]

Display isoelectric point.

void SeqPlot::showPlot (  wxDC &  dc, int  b, int  tx, int  ty, int  lx, int  ph )  [virtual]

Draws the plot.

void SeqPlot::useChouFasman (   )  [virtual]

Chou-Fasman-Plot.

virtual bool SeqPlot::useDirectRoutines (   )  [inline, virtual]

Do we draw directly (or do we use SeqPos)? Reimplemented from SeqDNA.

void SeqPlot::useHP (   )  [virtual]

Hydrophobicity plot.

void SeqPlot::useMW (   )  [virtual]

Molecular weight plot.

void SeqPlot::useNcoils (   )  [virtual]

Coiled-coil-Plot.

void SeqPlot::usePI (   )  [virtual]

Isoelectric point plot.

virtual wxString SeqPlot::whatsthis (   )  [inline, virtual]

Returns the linetype. Reimplemented from SeqDNA.

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Member Data Documentation

wxArrayString SeqPlot::d1 [private]

wxArrayString SeqPlot::d2 [private]

wxArrayString SeqPlot::d3 [private]

float SeqPlot::data_h [private]

float SeqPlot::data_max [private]

float SeqPlot::data_min [private]

float SeqPlot::data_step [private]

wxString SeqPlot::hp_method [private]

int SeqPlot::hp_window [private]

int SeqPlot::l_bottom [private]

int SeqPlot::l_top [private]

int SeqPlot::lines [private]

wxRect SeqPlot::plotr [private]

vector<TAAProp> SeqPlot::prop [private]

bool SeqPlot::startOfLine [private]

enum { ... } SeqPlot::type [private]

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceCanvas.h
• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceTypePlot.cpp

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