SequenceCanvas Class Reference

The main sequence display class. More...

#include <SequenceCanvas.h>

List of all members.

Public Member Functions
	SequenceCanvas (wxWindow *parent, const wxPoint &pos, const wxSize &size)
	Constructor.
virtual	~SequenceCanvas ()
	Destructor.
virtual void	OnDraw (wxDC &dc)
	Draws the sequence.
virtual void	safeShow (wxDC &dc)
	Draws the sequence in a memory device context, then blits it over to the "real" one.
virtual void	OnEvent (wxMouseEvent &event)
	Mouse event handler.
virtual void	OnSize (wxSizeEvent &event)
	Resize event handler.
virtual void	OnCharHook (wxKeyEvent &event)
	Key event handler.
virtual void	vecEdit (wxCommandEvent &ev)
	Edit event handler.
virtual void	blastDNA (wxCommandEvent &ev)
	"BLAST DNA" event handler
virtual void	blastAA (wxCommandEvent &ev)
	"BLAST amino acids" event handler
virtual void	OnCopyText (wxCommandEvent &ev)
	"Copy as text" event handler
virtual void	OnCopyImage (wxCommandEvent &ev)
	"Copy as image" event handler
virtual void	OnSaveImage (wxCommandEvent &ev)
	"Save as image" event handler
virtual void	OnPrint (wxCommandEvent &ev)
	Printing event handler.
virtual void	OnCut (wxCommandEvent &ev)
	Cut event handler.
virtual void	OnCopy (wxCommandEvent &ev)
	Copy event handler.
virtual void	OnPrimerForward (wxCommandEvent &ev)
	"Run PCR with forward primer" event handler
virtual void	OnPrimerBackward (wxCommandEvent &ev)
	"Run PCR with backward primer" event handler
virtual void	OnPrimerBoth (wxCommandEvent &ev)
	"Run PCR with both primers" event handler
virtual void	OnPrimerMutation (wxCommandEvent &ev)
	"Run PCR with mutation primers" event handler
virtual void	OnSilmut (wxCommandEvent &ev)
	"Silent mutation" event handler
virtual void	OnWhatCuts (wxCommandEvent &event)
	"Find restriction enzymes that cut" event handler
virtual void	OnSelAsNewPrimer (wxCommandEvent &ev)
	"Selection as new primer" event handler
virtual void	OnViewOriginal (wxCommandEvent &ev)
	"View original" mini-display event handler
virtual void	OnViewReal (wxCommandEvent &ev)
	View 1:1" mini-display event handler.
virtual void	OnViewCondensed (wxCommandEvent &ev)
	View condensed" mini-display event handler.
virtual void	OnBacktranslate (wxCommandEvent &ev)
	"Backtranslate amino acids into DNA" event handler
virtual void	OnPhylip (wxCommandEvent &ev)
	"Phylip" event handler (all in one)
virtual void	OnOpenFeature (wxCommandEvent &event)
	"Open feature" event handler
virtual void	OnSeqUp (wxCommandEvent &ev)
	"Move alignment sequence up" event handler
virtual void	OnSeqDown (wxCommandEvent &ev)
	"Move alignment sequence down" event handler
virtual void	OnSeqTop (wxCommandEvent &ev)
	"Move alignment sequence to top" event handler
virtual void	OnSeqBottom (wxCommandEvent &ev)
	"Move alignment sequence to bottom" event handler
virtual void	OnToggleFeat (wxCommandEvent &ev)
	"Toggle feature display for this alignment sequence" event handler
virtual void	OnCopyResultDNA (wxCommandEvent &ev)
	"Copy DNA resulting from PCR" event handler
virtual void	OnCopyResultAA (wxCommandEvent &ev)
	"Copy amino acids for DNA resulting from PCR" event handler
virtual void	OnNewFromResultDNA (wxCommandEvent &ev)
	"New DNA module resulting from PCR" event handler
virtual void	OnNewFromResultAA (wxCommandEvent &ev)
	"New amino acids module for DNA resulting from PCR" event handler
virtual void	OnInsertGap (wxCommandEvent &ev)
	"Insert gap into alignment sequence" event handler
virtual void	OnDeleteGap (wxCommandEvent &ev)
	"Delete gap from alignment sequence" event handler
virtual void	OnInsertOtherGaps (wxCommandEvent &ev)
	"Insert gap into all other alignment sequences" event handler
virtual void	OnDeleteOtherGaps (wxCommandEvent &ev)
	"Delete gap from all other alignment sequences" event handler
virtual void	OnStrandCopy35 (wxCommandEvent &event)
	"Copy the 3'->5' strand" event handler
virtual void	OnStrandCopy53 (wxCommandEvent &event)
	"Copy the 5'->3' strand" event handler
virtual void	OnStrandCopyBoth (wxCommandEvent &event)
	"Copy both strands as a text" event handler
virtual void	OnStrandNew35 (wxCommandEvent &event)
	"Generate new DNA module from 3'->5' strand" event handler
virtual void	OnStrandNew53 (wxCommandEvent &event)
	"Generate new DNA module from 5'->3' strand" event handler
virtual void	OnStrandNewBoth (wxCommandEvent &event)
	"Generate new DNA modules from both strands" event handler
virtual void	OnInsertRestrictionSiteLeft (wxCommandEvent &ev)
	"Insert restriction site left of the marking" event handler
virtual void	OnInsertRestrictionSiteRight (wxCommandEvent &ev)
	"Insert restriction site right of the marking" event handler
virtual void	OnPaste (wxCommandEvent &ev)
	Paste event handler.
virtual void	OnFocus (wxFocusEvent &event)
	"Display gets focus" event handler
virtual void	OnKillFocus (wxFocusEvent &event)
	"Display loses focus" event handler
virtual void	OnAppearance (wxCommandEvent &event)
	Change the apperance of the sequence.
virtual void	rsHideLimit (wxCommandEvent &ev)
	"Limit restriction enzymes" event handler
virtual void	OnABIViewOnly (wxCommandEvent &ev)
	View toggle for ABI display.
virtual wxString	getSelection ()
	Returns the current selection as a wxString.
virtual void	updateEdit (TVector *v, wxString id, int from)
	Updates the sequences and display once a key was pressed and, thus, the sequence altered.
virtual void	arrange ()
	Arranges tghe layout for all the seq structures.
virtual SeqBasic *	findMouseTarget (wxPoint pt, int &pos)
	Returns a pointer to the seq structure (and the position inside) the given point is within.
virtual int	findMouseTargetItem (wxPoint pt)
	Returns the ID of the seq structure the given point is within.
virtual SeqBasic *	findID (wxString id)
	Returns the pointer to the seq structure with the given ID string.
virtual void	mark (SeqBasic *where, int from, int to, int value=1)
	Marks part of a sequence.
virtual void	mark (wxString id, int from, int to, int value=1, int force_row=-1)
	Marks part of a sequence.
virtual bool	inMarkRange (int x, int f, int t, int l)
	Is this span withing the marked range?
virtual void	ensureVisible (int pos)
	Make sure the position is in the visible part of the display; scroll if necessary.
virtual int	getBatchMark ()
	I forgot what this does.
virtual void	MyGetClientSize (int *w, int *h)
	Wrapper function; will compensate for printing device context.
virtual void	MyGetSize (int *w, int *h)
	Wrapper function; will compensate for printing device context.
virtual wxSize	MyGetClientSize ()
	Wrapper function; will compensate for printing device context.
virtual void	MyGetViewStart (int *x, int *y)
	Wrapper function; will compensate for printing device context.
virtual void	SilentRefresh ()
	Refresh without cleaning background first (no flicker).
virtual bool	doOverwrite ()
	Are we in edit overwrite mode?
virtual TAminoAcids *	getAA ()
	Returns pointer to amino acid module, or NULL.
virtual TPrimerDesign *	getPD ()
	Returns pointer to primer design module, or NULL.
virtual TAlignment *	getAln ()
	Returns pointer to alignment module, or NULL.
virtual wxString	getChildType ()
	Returns the child identifier, or _T("").
virtual bool	getPrintToColor ()
	Are we printing to a color printer?
virtual void	setPrintToColor (bool _b)
	We are printing to a color printer!
virtual bool	getDrawAll ()
	Are we drawing everything ( not just the visible part)?
virtual void	setDrawAll (bool _b)
	We are drawing everything ( not just the visible part).
virtual bool	isHorizontal ()
	Is the display set to horizontal mode?
virtual void	setHorizontal (bool _b)
	Set the display to horizontal mode.
virtual void	toggleHorizontal ()
	Toggle horizontal/vertical mode.
virtual bool	getHide ()
	Is the display hidden (so we don't have to draw anything)?
virtual void	doHide (bool _b)
	Hide the display.
virtual bool	isMiniDisplay ()
	Is this a mini display in the amino acid module?
virtual void	setMiniDisplay (bool _b)
	This is a mini display in the amino acid module.
virtual SeqBasic *	getLastWhere ()
	Returns a pointer to the last marked seq structure.
virtual void	setLastWhere (SeqBasic *where)
virtual bool	isPrinting ()
	Are we printing (or drawing on the screen)?
virtual void	forceOverwrite (bool _b)
	Ensure overwrite mode (for example, ABI and PCR mode).
virtual bool	getEditMode ()
	Are we editing?
virtual void	setEditMode (bool _b)
	Sets wether we're editing.
virtual void	setLowX (int _i)
	Minimum X coodrinate to draw.
virtual void	startEdit (wxString id)
	Initiate editing mode.
virtual void	stopEdit ()
	Terminate editing mode.
virtual int	markedFrom ()
	Return first marked position, or -1.
virtual int	markedTo ()
	Return last marked position, or -1.
virtual void	unmark ()
	Removes any marking.
virtual int	NumberOfLines ()
	Returns the number of seq struntures AND blank lines.
virtual void	set_font_size (int size=12)
Public Attributes
ChildBase *	child
	Wanna-be universal pointer to the containing module.
MyChild *	p
	Pointer to the containing MyChild; if this is not within the DNA module, NULL.
int	blankline
int	charwidth
int	charheight
int	hardstop
int	lastmarked
int	maxendnumberlength
int	lastyoffset
int	blocksize
int	border
wxArraySeqBasic	seq
	The list of SeqBasic structures.
wxFont *	font
wxFont *	smallFont
wxFont *	varFont
wxString	edit_id
wxString	edit_valid
Private Member Functions
virtual wxBitmap *	getSequenceBitmap ()
	Returns the sequences display as a bitmap.
virtual TVector *	getPCR_DNA_vector ()
	Returns a pointer to the DNA vector in PCR mode; otherwise, NULL.
virtual void	showContextMenu (SeqBasic *where, int pos, wxPoint pt)
	Generates the context menu.
virtual void	insertRestrictionSite (bool left)
	Creates a new restriction site via simulated editing, left or right of the current mark.
virtual void	editSequence (int k, wxKeyEvent &event)
virtual void	editCharPressed (int k, TVector *v, wxString *the_sequence)
virtual void	editSpecialKeyPressed (int k, TVector *v, wxString *the_sequence, int wy, wxKeyEvent &event)
Private Attributes
bool	printToColor
bool	drawall
bool	horizontal
bool	hide
bool	miniDisplay
bool	preventUpdate
bool	marking
bool	drawing
bool	printing
bool	wantOverwrite
bool	forceoverwrite
bool	editMode
wxDC *	print_dc
int	_from
int	_to
int	mark_firstrow
int	mark_lastrow
int	lastclick
int	lowx
int	lowy
int	lastpos
int	print_maxx
int	vpx
int	vpy
wxString	lastToolTip
SeqAlign *	last_al
SeqBasic *	lastwhere
int	contextMenuPosition
int	last_font_size

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Detailed Description

The main sequence display class.

This class gets filled with "sequence lines", which are descendants of SeqBasic. It manages the "total" layout, mouse and keyboard actions, scrolling, and context menus.

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Constructor & Destructor Documentation

SequenceCanvas::SequenceCanvas (  wxWindow *  parent, const wxPoint &  pos, const wxSize &  size )

Constructor.

SequenceCanvas::~SequenceCanvas (   )  [virtual]

Destructor.

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Member Function Documentation

void SequenceCanvas::arrange (   )  [virtual]

Arranges tghe layout for all the seq structures.

void SequenceCanvas::blastAA (  wxCommandEvent &  ev  )  [virtual]

"BLAST amino acids" event handler

void SequenceCanvas::blastDNA (  wxCommandEvent &  ev  )  [virtual]

"BLAST DNA" event handler

virtual void SequenceCanvas::doHide (  bool  _b  )  [inline, virtual]

Hide the display.

bool SequenceCanvas::doOverwrite (   )  [virtual]

Are we in edit overwrite mode?

void SequenceCanvas::editCharPressed (  int  k, TVector *  v, wxString *  the_sequence )  [private, virtual]

void SequenceCanvas::editSequence (  int  k, wxKeyEvent &  event )  [private, virtual]

void SequenceCanvas::editSpecialKeyPressed (  int  k, TVector *  v, wxString *  the_sequence, int  wy, wxKeyEvent &  event )  [private, virtual]

void SequenceCanvas::ensureVisible (  int  pos  )  [virtual]

Make sure the position is in the visible part of the display; scroll if necessary.

SeqBasic * SequenceCanvas::findID (  wxString  id  )  [virtual]

Returns the pointer to the seq structure with the given ID string.

SeqBasic * SequenceCanvas::findMouseTarget (  wxPoint  pt, int &  pos )  [virtual]

Returns a pointer to the seq structure (and the position inside) the given point is within.

int SequenceCanvas::findMouseTargetItem (  wxPoint  pt  )  [virtual]

Returns the ID of the seq structure the given point is within.

virtual void SequenceCanvas::forceOverwrite (  bool  _b  )  [inline, virtual]

Ensure overwrite mode (for example, ABI and PCR mode).

TAminoAcids * SequenceCanvas::getAA (   )  [virtual]

Returns pointer to amino acid module, or NULL.

TAlignment * SequenceCanvas::getAln (   )  [virtual]

Returns pointer to alignment module, or NULL.

int SequenceCanvas::getBatchMark (   )  [virtual]

I forgot what this does.

wxString SequenceCanvas::getChildType (   )  [virtual]

Returns the child identifier, or _T("").

virtual bool SequenceCanvas::getDrawAll (   )  [inline, virtual]

Are we drawing everything ( not just the visible part)?

virtual bool SequenceCanvas::getEditMode (   )  [inline, virtual]

Are we editing?

virtual bool SequenceCanvas::getHide (   )  [inline, virtual]

Is the display hidden (so we don't have to draw anything)?

virtual SeqBasic* SequenceCanvas::getLastWhere (   )  [inline, virtual]

Returns a pointer to the last marked seq structure.

TVector * SequenceCanvas::getPCR_DNA_vector (   )  [private, virtual]

Returns a pointer to the DNA vector in PCR mode; otherwise, NULL.

TPrimerDesign * SequenceCanvas::getPD (   )  [virtual]

Returns pointer to primer design module, or NULL.

virtual bool SequenceCanvas::getPrintToColor (   )  [inline, virtual]

Are we printing to a color printer?

wxString SequenceCanvas::getSelection (   )  [virtual]

Returns the current selection as a wxString.

wxBitmap * SequenceCanvas::getSequenceBitmap (   )  [private, virtual]

Returns the sequences display as a bitmap.

bool SequenceCanvas::inMarkRange (  int  x, int  f, int  t, int  l )  [virtual]

Is this span withing the marked range?

void SequenceCanvas::insertRestrictionSite (  bool  left  )  [private, virtual]

Creates a new restriction site via simulated editing, left or right of the current mark.

virtual bool SequenceCanvas::isHorizontal (   )  [inline, virtual]

Is the display set to horizontal mode?

virtual bool SequenceCanvas::isMiniDisplay (   )  [inline, virtual]

Is this a mini display in the amino acid module?

virtual bool SequenceCanvas::isPrinting (   )  [inline, virtual]

Are we printing (or drawing on the screen)?

void SequenceCanvas::mark (  wxString  id, int  from, int  to, int  value = 1, int  force_row = -1 )  [virtual]

Marks part of a sequence.

void SequenceCanvas::mark (  SeqBasic *  where, int  from, int  to, int  value = 1 )  [virtual]

Marks part of a sequence.

virtual int SequenceCanvas::markedFrom (   )  [inline, virtual]

Return first marked position, or -1.

virtual int SequenceCanvas::markedTo (   )  [inline, virtual]

Return last marked position, or -1.

wxSize SequenceCanvas::MyGetClientSize (   )  [virtual]

Wrapper function; will compensate for printing device context.

void SequenceCanvas::MyGetClientSize (  int *  w, int *  h )  [virtual]

Wrapper function; will compensate for printing device context.

void SequenceCanvas::MyGetSize (  int *  w, int *  h )  [virtual]

Wrapper function; will compensate for printing device context.

void SequenceCanvas::MyGetViewStart (  int *  x, int *  y )  [virtual]

Wrapper function; will compensate for printing device context.

virtual int SequenceCanvas::NumberOfLines (   )  [inline, virtual]

Returns the number of seq struntures AND blank lines.

void SequenceCanvas::OnABIViewOnly (  wxCommandEvent &  ev  )  [virtual]

View toggle for ABI display.

void SequenceCanvas::OnAppearance (  wxCommandEvent &  event  )  [virtual]

Change the apperance of the sequence.

void SequenceCanvas::OnBacktranslate (  wxCommandEvent &  ev  )  [virtual]

"Backtranslate amino acids into DNA" event handler

void SequenceCanvas::OnCharHook (  wxKeyEvent &  event  )  [virtual]

Key event handler.

void SequenceCanvas::OnCopy (  wxCommandEvent &  ev  )  [virtual]

Copy event handler.

void SequenceCanvas::OnCopyImage (  wxCommandEvent &  ev  )  [virtual]

"Copy as image" event handler

void SequenceCanvas::OnCopyResultAA (  wxCommandEvent &  ev  )  [virtual]

"Copy amino acids for DNA resulting from PCR" event handler

void SequenceCanvas::OnCopyResultDNA (  wxCommandEvent &  ev  )  [virtual]

"Copy DNA resulting from PCR" event handler

void SequenceCanvas::OnCopyText (  wxCommandEvent &  ev  )  [virtual]

"Copy as text" event handler

void SequenceCanvas::OnCut (  wxCommandEvent &  ev  )  [virtual]

Cut event handler.

void SequenceCanvas::OnDeleteGap (  wxCommandEvent &  ev  )  [virtual]

"Delete gap from alignment sequence" event handler

void SequenceCanvas::OnDeleteOtherGaps (  wxCommandEvent &  ev  )  [virtual]

"Delete gap from all other alignment sequences" event handler

void SequenceCanvas::OnDraw (  wxDC &  dc  )  [virtual]

Draws the sequence. !!

void SequenceCanvas::OnEvent (  wxMouseEvent &  event  )  [virtual]

Mouse event handler.

void SequenceCanvas::OnFocus (  wxFocusEvent &  event  )  [virtual]

"Display gets focus" event handler

void SequenceCanvas::OnInsertGap (  wxCommandEvent &  ev  )  [virtual]

"Insert gap into alignment sequence" event handler

void SequenceCanvas::OnInsertOtherGaps (  wxCommandEvent &  ev  )  [virtual]

"Insert gap into all other alignment sequences" event handler

void SequenceCanvas::OnInsertRestrictionSiteLeft (  wxCommandEvent &  ev  )  [virtual]

"Insert restriction site left of the marking" event handler

void SequenceCanvas::OnInsertRestrictionSiteRight (  wxCommandEvent &  ev  )  [virtual]

"Insert restriction site right of the marking" event handler

void SequenceCanvas::OnKillFocus (  wxFocusEvent &  event  )  [virtual]

"Display loses focus" event handler

void SequenceCanvas::OnNewFromResultAA (  wxCommandEvent &  ev  )  [virtual]

"New amino acids module for DNA resulting from PCR" event handler

void SequenceCanvas::OnNewFromResultDNA (  wxCommandEvent &  ev  )  [virtual]

"New DNA module resulting from PCR" event handler

void SequenceCanvas::OnOpenFeature (  wxCommandEvent &  event  )  [virtual]

"Open feature" event handler

void SequenceCanvas::OnPaste (  wxCommandEvent &  ev  )  [virtual]

Paste event handler.

void SequenceCanvas::OnPhylip (  wxCommandEvent &  ev  )  [virtual]

"Phylip" event handler (all in one)

void SequenceCanvas::OnPrimerBackward (  wxCommandEvent &  ev  )  [virtual]

"Run PCR with backward primer" event handler

void SequenceCanvas::OnPrimerBoth (  wxCommandEvent &  ev  )  [virtual]

"Run PCR with both primers" event handler

void SequenceCanvas::OnPrimerForward (  wxCommandEvent &  ev  )  [virtual]

"Run PCR with forward primer" event handler

void SequenceCanvas::OnPrimerMutation (  wxCommandEvent &  ev  )  [virtual]

"Run PCR with mutation primers" event handler

void SequenceCanvas::OnPrint (  wxCommandEvent &  ev  )  [virtual]

Printing event handler.

void SequenceCanvas::OnSaveImage (  wxCommandEvent &  ev  )  [virtual]

"Save as image" event handler

void SequenceCanvas::OnSelAsNewPrimer (  wxCommandEvent &  ev  )  [virtual]

"Selection as new primer" event handler

void SequenceCanvas::OnSeqBottom (  wxCommandEvent &  ev  )  [virtual]

"Move alignment sequence to bottom" event handler

void SequenceCanvas::OnSeqDown (  wxCommandEvent &  ev  )  [virtual]

"Move alignment sequence down" event handler

void SequenceCanvas::OnSeqTop (  wxCommandEvent &  ev  )  [virtual]

"Move alignment sequence to top" event handler

void SequenceCanvas::OnSeqUp (  wxCommandEvent &  ev  )  [virtual]

"Move alignment sequence up" event handler

void SequenceCanvas::OnSilmut (  wxCommandEvent &  ev  )  [virtual]

"Silent mutation" event handler

void SequenceCanvas::OnSize (  wxSizeEvent &  event  )  [virtual]

Resize event handler.

void SequenceCanvas::OnStrandCopy35 (  wxCommandEvent &  event  )  [virtual]

"Copy the 3'->5' strand" event handler

void SequenceCanvas::OnStrandCopy53 (  wxCommandEvent &  event  )  [virtual]

"Copy the 5'->3' strand" event handler

void SequenceCanvas::OnStrandCopyBoth (  wxCommandEvent &  event  )  [virtual]

"Copy both strands as a text" event handler

void SequenceCanvas::OnStrandNew35 (  wxCommandEvent &  event  )  [virtual]

"Generate new DNA module from 3'->5' strand" event handler

void SequenceCanvas::OnStrandNew53 (  wxCommandEvent &  event  )  [virtual]

"Generate new DNA module from 5'->3' strand" event handler

void SequenceCanvas::OnStrandNewBoth (  wxCommandEvent &  event  )  [virtual]

"Generate new DNA modules from both strands" event handler

void SequenceCanvas::OnToggleFeat (  wxCommandEvent &  ev  )  [virtual]

"Toggle feature display for this alignment sequence" event handler

void SequenceCanvas::OnViewCondensed (  wxCommandEvent &  ev  )  [virtual]

View condensed" mini-display event handler.

void SequenceCanvas::OnViewOriginal (  wxCommandEvent &  ev  )  [virtual]

"View original" mini-display event handler

void SequenceCanvas::OnViewReal (  wxCommandEvent &  ev  )  [virtual]

View 1:1" mini-display event handler.

void SequenceCanvas::OnWhatCuts (  wxCommandEvent &  event  )  [virtual]

"Find restriction enzymes that cut" event handler

void SequenceCanvas::rsHideLimit (  wxCommandEvent &  ev  )  [virtual]

"Limit restriction enzymes" event handler

void SequenceCanvas::safeShow (  wxDC &  dc  )  [virtual]

Draws the sequence in a memory device context, then blits it over to the "real" one.

void SequenceCanvas::set_font_size (  int  size = 12  )  [virtual]

virtual void SequenceCanvas::setDrawAll (  bool  _b  )  [inline, virtual]

We are drawing everything ( not just the visible part).

void SequenceCanvas::setEditMode (  bool  _b  )  [virtual]

Sets wether we're editing.

virtual void SequenceCanvas::setHorizontal (  bool  _b  )  [inline, virtual]

Set the display to horizontal mode.

virtual void SequenceCanvas::setLastWhere (  SeqBasic *  where  )  [inline, virtual]

virtual void SequenceCanvas::setLowX (  int  _i  )  [inline, virtual]

Minimum X coodrinate to draw.

virtual void SequenceCanvas::setMiniDisplay (  bool  _b  )  [inline, virtual]

This is a mini display in the amino acid module.

virtual void SequenceCanvas::setPrintToColor (  bool  _b  )  [inline, virtual]

We are printing to a color printer!

void SequenceCanvas::showContextMenu (  SeqBasic *  where, int  pos, wxPoint  pt )  [private, virtual]

Generates the context menu.

void SequenceCanvas::SilentRefresh (   )  [virtual]

Refresh without cleaning background first (no flicker).

void SequenceCanvas::startEdit (  wxString  id  )  [virtual]

Initiate editing mode.

void SequenceCanvas::stopEdit (   )  [virtual]

Terminate editing mode.

virtual void SequenceCanvas::toggleHorizontal (   )  [inline, virtual]

Toggle horizontal/vertical mode.

void SequenceCanvas::unmark (   )  [virtual]

Removes any marking.

void SequenceCanvas::updateEdit (  TVector *  v, wxString  id, int  from )  [virtual]

Updates the sequences and display once a key was pressed and, thus, the sequence altered.

void SequenceCanvas::vecEdit (  wxCommandEvent &  ev  )  [virtual]

Edit event handler.

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Member Data Documentation

int SequenceCanvas::_from [private]

int SequenceCanvas::_to [private]

int SequenceCanvas::blankline

int SequenceCanvas::blocksize

int SequenceCanvas::border

int SequenceCanvas::charheight

int SequenceCanvas::charwidth

ChildBase* SequenceCanvas::child

Wanna-be universal pointer to the containing module.

int SequenceCanvas::contextMenuPosition [private]

bool SequenceCanvas::drawall [private]

bool SequenceCanvas::drawing [private]

wxString SequenceCanvas::edit_id

wxString SequenceCanvas::edit_valid

bool SequenceCanvas::editMode [private]

wxFont* SequenceCanvas::font

bool SequenceCanvas::forceoverwrite [private]

int SequenceCanvas::hardstop

bool SequenceCanvas::hide [private]

bool SequenceCanvas::horizontal [private]

SeqAlign* SequenceCanvas::last_al [private]

int SequenceCanvas::last_font_size [private]

int SequenceCanvas::lastclick [private]

int SequenceCanvas::lastmarked

int SequenceCanvas::lastpos [private]

wxString SequenceCanvas::lastToolTip [private]

SeqBasic* SequenceCanvas::lastwhere [private]

int SequenceCanvas::lastyoffset

int SequenceCanvas::lowx [private]

int SequenceCanvas::lowy [private]

int SequenceCanvas::mark_firstrow [private]

int SequenceCanvas::mark_lastrow [private]

bool SequenceCanvas::marking [private]

int SequenceCanvas::maxendnumberlength

bool SequenceCanvas::miniDisplay [private]

MyChild* SequenceCanvas::p

Pointer to the containing MyChild; if this is not within the DNA module, NULL.

bool SequenceCanvas::preventUpdate [private]

wxDC* SequenceCanvas::print_dc [private]

int SequenceCanvas::print_maxx [private]

bool SequenceCanvas::printing [private]

bool SequenceCanvas::printToColor [private]

wxArraySeqBasic SequenceCanvas::seq

The list of SeqBasic structures.

wxFont * SequenceCanvas::smallFont

wxFont * SequenceCanvas::varFont

int SequenceCanvas::vpx [private]

int SequenceCanvas::vpy [private]

bool SequenceCanvas::wantOverwrite [private]

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceCanvas.h
• C:/Programme/Dev-Cpp/Mine/GENtle/SequenceCanvas.cpp

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