TAlignLine Class Reference

Helper class for TAlignment; represents a line (a sequence) in the alignment. More...

#include <Alignment.h>

List of all members.

Public Member Functions
	TAlignLine ()
	Constructor.
	~TAlignLine ()
	Destructor.
void	ResetSequence ()
	Resets the settings to default.
ChildBase *	FindOrigin ()
	Returns a pointer to the ChildBase structure containing the original sequence, or NULL.
void	showFeatures ()
	Display the features of this sequence.
void	hideFeatures ()
	Hide the features of this sequence.
TVector *	getFeatures ()
	Returns a pointer to the TVector structure, so the features can be accessed.
bool	hasFeatures ()
	Does this sequence have annotated items/features.
Public Attributes
wxString	name
wxString	s
TVector *	v
bool	isIdentity
	Is this line an identity display (or a "real" sequence)?
wxString	phylip_id
vector< SequenceCharMarkup >	markup
Private Attributes
TVector *	features

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Detailed Description

Helper class for TAlignment; represents a line (a sequence) in the alignment.

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Constructor & Destructor Documentation

TAlignLine::TAlignLine (   )

Constructor.

TAlignLine::~TAlignLine (   )

Destructor.

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Member Function Documentation

ChildBase * TAlignLine::FindOrigin (   )

Returns a pointer to the ChildBase structure containing the original sequence, or NULL.

TVector * TAlignLine::getFeatures (   )

Returns a pointer to the TVector structure, so the features can be accessed.

bool TAlignLine::hasFeatures (   )

Does this sequence have annotated items/features.

void TAlignLine::hideFeatures (   )

Hide the features of this sequence.

void TAlignLine::ResetSequence (   )

Resets the settings to default.

void TAlignLine::showFeatures (   )

Display the features of this sequence.

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Member Data Documentation

TVector* TAlignLine::features [private]

bool TAlignLine::isIdentity

Is this line an identity display (or a "real" sequence)?

vector<SequenceCharMarkup> TAlignLine::markup

wxString TAlignLine::name

wxString TAlignLine::phylip_id

wxString TAlignLine::s

TVector* TAlignLine::v

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/Alignment.h
• C:/Programme/Dev-Cpp/Mine/GENtle/Alignment.cpp

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