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TAlignment Member List

This is the complete list of members for TAlignment, including all inherited members.

aaaTAlignment [private]
Activate()ChildBase [virtual]
algorithmTAlignment
allow_copyChildBase
allow_cutChildBase
allow_findChildBase
allow_pasteChildBase
allow_printChildBase
allow_saveChildBase
allow_undoChildBase
arrangedExport(wxFile &out, wxString n, wxString s, int l)ChildBase [protected, virtual]
boldTAlignment
callMiddleMouseButton(int id, int pos, wxString _mode=_T(""))TAlignment [virtual]
caniclose(wxCloseEvent &event)ChildBase [virtual]
ChildBase()ChildBase
ChildBase(wxWindow *parent, const wxString &title, const wxPoint &pos, const wxSize &size, const long style)ChildBase
ChildBase(wxWindow *parent, const wxString &title)ChildBase
colAATAlignment
colCurTAlignment
colDNATAlignment
consTAlignment
consensusSequenceTAlignment
CreateToolBar(int i)ChildBase [virtual]
CreateToolBar(int i, int j, wxString s)ChildBase [virtual]
cSequenceChildBase
databaseTAlignment
defChildBase
doExport(wxString filename, int filter)TAlignment [protected, virtual]
editAppearance(int from, int to, int firstline, int lastline)TAlignment
EnforceRefesh()ChildBase [inline, virtual]
Entry()TAlignment [virtual]
exportVector(TVector *vec, wxFile &out, int filter, wxString filename=_T(""))ChildBase [protected, virtual]
findColors(char c1, char c2, bool fg)TAlignment [virtual]
fixMenus(int i)TAlignment [private, virtual]
fontsizeTAlignment [private]
fromVector(TVector *nv)TAlignment [virtual]
gapTAlignment
gap_penaltyTAlignment
generateConsensusSequence(bool addit=true)TAlignment [private, virtual]
getCharMarkup(SequenceCharMarkup &scm, int vline, int pos, int vfirst)TAlignment
getExportFilters()TAlignment [protected, virtual]
GetMenuBar()ChildBase [virtual]
getName()TAlignment [virtual]
GetToolBar()ChildBase [virtual]
init()ChildBase [virtual]
initHelp()ChildBase [virtual]
initme()TAlignment [virtual]
inMainTreeChildBase
invokeOriginal(int id, int pos)TAlignment [virtual]
invsTAlignment
isAA()TAlignment [virtual]
isDNA()TAlignment [virtual]
isThreadRunning()TAlignment [inline, virtual]
keepIdentityTAlignment [private]
linesTAlignment
matchTAlignment
matrixTAlignment
MatrixAlignment(wxString &_s1, wxString &_s2, bool local)TAlignment [virtual]
MatrixBacktrack(vector< wxArrayInt > &back, wxString s1, wxString s2, wxString &t1, wxString &t2, int i, int j)TAlignment [virtual]
Maximize(bool isit=true)ChildBase [virtual]
menubarChildBase [protected]
mismatchTAlignment
mmbTAlignment [private]
monoTAlignment
MoveUpDown(int what, int where)TAlignment [virtual]
myDelete(int line, int pos)TAlignment [private, virtual]
MyFrame classChildBase [friend]
myInsert(int line, int pos, char what)TAlignment [private, virtual]
nameTAlignment
NeedlemanWunsch(wxString &s1, wxString &s2)TAlignment [virtual]
OnClose(wxCloseEvent &event)ChildBase [virtual]
OnCopy(wxCommandEvent &event)TAlignment [virtual]
OnDummy(wxCommandEvent &WXUNUSED(event))ChildBase [inline, virtual]
OnExport(wxCommandEvent &WXUNUSED(event))ChildBase [virtual]
OnFileSave(wxCommandEvent &ev)TAlignment [virtual]
ChildBase::OnFileSave(wxCommandEvent &WXUNUSED(event))ChildBase [inline, virtual]
OnFocus(wxFocusEvent &event)ChildBase [virtual]
OnFontsize(wxCommandEvent &event)TAlignment [virtual]
OnHorizontal(wxCommandEvent &event)TAlignment [virtual]
OnMarkAll(wxCommandEvent &ev)TAlignment [virtual]
OnMenuBold(wxCommandEvent &ev)TAlignment [virtual]
OnMenuCons(wxCommandEvent &ev)TAlignment [virtual]
OnMenuFeat(wxCommandEvent &ev)TAlignment [virtual]
OnMenuIdent(wxCommandEvent &ev)TAlignment [virtual]
OnMenuInvs(wxCommandEvent &ev)TAlignment [virtual]
OnMenuMono(wxCommandEvent &ev)TAlignment [virtual]
OnMenuNorm(wxCommandEvent &ev)TAlignment [virtual]
OnMenuRNA(wxCommandEvent &ev)TAlignment [virtual]
OnMenuSeq(wxCommandEvent &ev)TAlignment [virtual]
OnMenuSiml(wxCommandEvent &ev)TAlignment [virtual]
OnMenuSoa(wxCommandEvent &ev)TAlignment [virtual]
OnMenuSoaI(wxCommandEvent &ev)TAlignment [virtual]
OnPaste(wxCommandEvent &WXUNUSED(event))ChildBase [inline, virtual]
OnSeqPrint(wxCommandEvent &event)TAlignment [virtual]
OnSettings(wxCommandEvent &ev)TAlignment [virtual]
prealigned(wxArrayString &vs, wxArrayChildBase &vc)TAlignment [virtual]
readTabColors(wxString filename)TAlignment [protected, virtual]
recalcAlignments()TAlignment [virtual]
redoAlignments(bool doRecalc=true)TAlignment [virtual]
RunPhylip(int cmd)TAlignment [virtual]
scTAlignment
SetIcon(wxIcon icon)ChildBase [virtual]
SetMenuBar(wxMenuBar *menu_bar)ChildBase [virtual]
SetMyMenuBar()ChildBase [virtual]
showIdentityTAlignment
showName(wxString x=_T(""))ChildBase [virtual]
SmithWaterman(wxString &s1, wxString &s2)TAlignment [virtual]
TAlignment(wxWindow *parent, const wxString &title)TAlignment
threadRunningTAlignment [private]
toolbarChildBase [protected]
updateSequence()TAlignment [private, virtual]
updateSequenceCanvas(bool remember=false)ChildBase [virtual]
updateToolbar()ChildBase [protected, virtual]
updateUndoMenu()ChildBase [virtual]
vecChildBase
~TAlignment()TAlignment [virtual]


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