TAminoAcids Class Reference

The amino acid sequence display module. More...

#include <AminoAcids.h>

Inheritance diagram for TAminoAcids:

List of all members.

Public Member Functions
	TAminoAcids (wxWindow *parent, const wxString &title)
	Constructor.
virtual	~TAminoAcids ()
	Destructor.
virtual void	initme ()
	Initialization.
virtual wxString	getName ()
	Returns the name of the TVector structure.
virtual void	showSequence ()
	Update the sequence display.
virtual void	showStat ()
	Show the sequence statistics box.
virtual void	OnMarkAll (wxCommandEvent &event)
	"Mark all" event handler
virtual void	OnFileSave (wxCommandEvent &WXUNUSED(event))
	"Save sequence" event handler
virtual void	OnFind (wxCommandEvent &event)
	Find event handler.
virtual void	OnCut (wxCommandEvent &event)
	"Cut" event handler
virtual void	OnCopy (wxCommandEvent &event)
	"Copy" event handler
virtual void	OnPaste (wxCommandEvent &event)
	"Paste" event handler
virtual void	OnEditMode (wxCommandEvent &event)
	"Toggle edit mode" event handler
virtual void	OnEditName (wxCommandEvent &event)
	"Edit name" event handler
virtual void	OnPrint (wxCommandEvent &event)
	Print event handler.
virtual void	OnAsNewFeature (wxCommandEvent &event)
	"Selection as new feature" event handler
virtual void	OnBlastAA (wxCommandEvent &event)
	"Blast sequence" event handler
virtual void	OnPhotometer (wxCommandEvent &event)
	"Start photometer calculator" event handler
virtual void	invokeVectorEditor (wxString what=_T(""), int num=0, bool forceUpdate=false)
	"Edit sequence dialog" event handler
virtual void	OnHorizontal (wxCommandEvent &event)
	"Toggle horizontal/vertical" event handler
virtual void	OnListBox (wxCommandEvent &event)
	"List box choice" event handler
virtual void	OnIP (wxCommandEvent &event)
	"Inline plot dropdown box" event handler
virtual void	OnBacktranslate (wxCommandEvent &event)
	"Backtranslate to DNA" event handler
virtual void	OnIPC (wxCommandEvent &event)
	"IPC prediction" event handler
virtual void	OnSpeak (wxCommandEvent &WXUNUSED(event))
	Speak sequence event handler.
virtual void	OnProteolysis (wxCommandEvent &WXUNUSED(event))
	Proteolysis event handler.
virtual void	OnFontsize (wxCommandEvent &event)
	Fontsize event handler.
virtual void	OnDummy (wxCommandEvent &WXUNUSED(event))
virtual void	Undo (wxCommandEvent &event)
	"Undo" event handler
virtual void	Redo (wxCommandEvent &event)
	"Redo" event handler (unused)
virtual void	updateUndoMenu ()
	Updates the message for the undo function.
virtual void	handleListBox (wxString t)
	Choses a new entry from the listbox.
Public Attributes
SequenceCanvas *	sc
SequenceCanvas *	sc2
wxTextCtrl *	stat
	Pointer to the sequence statistics mini-display.
TURLtext *	desc
	Pointer to the sequence description mini-display.
wxSplitterWindow *	hs
wxSplitterWindow *	vs
int	from
	Cursor position (sometimes...).
int	miniDisplayOptions
	Options for the mini-display.
wxWindow *	curDisplay
PlasmidCanvas *	pc
	Plasmid canvas, used in "scheme" mini-display.
wxBoxSizer *	v0
Protected Member Functions
virtual void	updateToolbar ()
	Updates the toolbar to the current module.
Private Attributes
wxListBox *	lb
	Pointer to the listbox with different "mini-displays".
wxBoxSizer *	h1
wxBoxSizer *	v1
wxChoice *	inlinePlot
	Inline plot dropdown box (in toolbar).
wxString	lastLBsel
	The last selected "mini-display", as the string from the listbox.
wxChoice *	fontsize
Friends
class	TTestSuite

---

Detailed Description

The amino acid sequence display module.

---

Constructor & Destructor Documentation

TAminoAcids::TAminoAcids (  wxWindow *  parent, const wxString &  title )

Constructor.

TAminoAcids::~TAminoAcids (   )  [virtual]

Destructor.

---

Member Function Documentation

wxString TAminoAcids::getName (   )  [virtual]

Returns the name of the TVector structure. Reimplemented from ChildBase.

void TAminoAcids::handleListBox (  wxString  t  )  [virtual]

Choses a new entry from the listbox.

void TAminoAcids::initme (   )  [virtual]

Initialization.

void TAminoAcids::invokeVectorEditor (  wxString  what = _T(""), int  num = 0, bool  forceUpdate = false )  [virtual]

"Edit sequence dialog" event handler

void TAminoAcids::OnAsNewFeature (  wxCommandEvent &  event  )  [virtual]

"Selection as new feature" event handler

void TAminoAcids::OnBacktranslate (  wxCommandEvent &  event  )  [virtual]

"Backtranslate to DNA" event handler

void TAminoAcids::OnBlastAA (  wxCommandEvent &  event  )  [virtual]

"Blast sequence" event handler

void TAminoAcids::OnCopy (  wxCommandEvent &  event  )  [virtual]

"Copy" event handler

void TAminoAcids::OnCut (  wxCommandEvent &  event  )  [virtual]

"Cut" event handler

virtual void TAminoAcids::OnDummy (  wxCommandEvent &  WXUNUSED(event)  )  [inline, virtual]

Reimplemented from ChildBase.

void TAminoAcids::OnEditMode (  wxCommandEvent &  event  )  [virtual]

"Toggle edit mode" event handler

void TAminoAcids::OnEditName (  wxCommandEvent &  event  )  [virtual]

"Edit name" event handler

virtual void TAminoAcids::OnFileSave (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

"Save sequence" event handler Reimplemented from ChildBase.

void TAminoAcids::OnFind (  wxCommandEvent &  event  )  [virtual]

Find event handler.

void TAminoAcids::OnFontsize (  wxCommandEvent &  event  )  [virtual]

Fontsize event handler.

void TAminoAcids::OnHorizontal (  wxCommandEvent &  event  )  [virtual]

"Toggle horizontal/vertical" event handler

void TAminoAcids::OnIP (  wxCommandEvent &  event  )  [virtual]

"Inline plot dropdown box" event handler

void TAminoAcids::OnIPC (  wxCommandEvent &  event  )  [virtual]

"IPC prediction" event handler

void TAminoAcids::OnListBox (  wxCommandEvent &  event  )  [virtual]

"List box choice" event handler

void TAminoAcids::OnMarkAll (  wxCommandEvent &  event  )  [virtual]

"Mark all" event handler

void TAminoAcids::OnPaste (  wxCommandEvent &  event  )  [virtual]

"Paste" event handler

void TAminoAcids::OnPhotometer (  wxCommandEvent &  event  )  [virtual]

"Start photometer calculator" event handler

void TAminoAcids::OnPrint (  wxCommandEvent &  event  )  [virtual]

Print event handler.

virtual void TAminoAcids::OnProteolysis (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Proteolysis event handler.

virtual void TAminoAcids::OnSpeak (  wxCommandEvent &  WXUNUSED(event)  )  [virtual]

Speak sequence event handler.

void TAminoAcids::Redo (  wxCommandEvent &  event  )  [virtual]

"Redo" event handler (unused)

void TAminoAcids::showSequence (   )  [virtual]

Update the sequence display.

void TAminoAcids::showStat (   )  [virtual]

Show the sequence statistics box.

void TAminoAcids::Undo (  wxCommandEvent &  event  )  [virtual]

"Undo" event handler

void TAminoAcids::updateToolbar (   )  [protected, virtual]

Updates the toolbar to the current module. Reimplemented from ChildBase.

void TAminoAcids::updateUndoMenu (   )  [virtual]

Updates the message for the undo function. Reimplemented from ChildBase.

---

Friends And Related Function Documentation

friend class TTestSuite [friend]

---

Member Data Documentation

wxWindow* TAminoAcids::curDisplay

TURLtext* TAminoAcids::desc

Pointer to the sequence description mini-display.

wxChoice* TAminoAcids::fontsize [private]

int TAminoAcids::from

Cursor position (sometimes...).

wxBoxSizer* TAminoAcids::h1 [private]

wxSplitterWindow* TAminoAcids::hs

wxChoice* TAminoAcids::inlinePlot [private]

Inline plot dropdown box (in toolbar).

wxString TAminoAcids::lastLBsel [private]

The last selected "mini-display", as the string from the listbox.

wxListBox* TAminoAcids::lb [private]

Pointer to the listbox with different "mini-displays".

int TAminoAcids::miniDisplayOptions

Options for the mini-display.

PlasmidCanvas* TAminoAcids::pc

Plasmid canvas, used in "scheme" mini-display.

SequenceCanvas* TAminoAcids::sc

SequenceCanvas * TAminoAcids::sc2

wxTextCtrl* TAminoAcids::stat

Pointer to the sequence statistics mini-display.

wxBoxSizer* TAminoAcids::v0

wxBoxSizer * TAminoAcids::v1 [private]

wxSplitterWindow * TAminoAcids::vs

---

The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/AminoAcids.h
• C:/Programme/Dev-Cpp/Mine/GENtle/AminoAcids.cpp

---