| aaCount | TPrimer | [private] |
| ann1 | TPrimer | [private] |
| ann2 | TPrimer | [private] |
| annealingVector | TPrimer | |
| annm | TPrimer | [private] |
| annScore | TPrimer | [private] |
| atCount | TPrimer | [private] |
| caCount | TPrimer | [private] |
| CalcIUpair(wxString base0, wxString base, int i, bool max) | TPrimer | [private] |
| cgCount | TPrimer | [private] |
| checkFit(TVector *v, bool justCount=false) | TPrimer | |
| contents | TPrimer | [private] |
| CountNeighbors(wxString s) | TPrimer | [private] |
| ctCount | TPrimer | [private] |
| DeltaG(bool max) | TPrimer | [private] |
| deltaGValmax | TPrimer | [private] |
| deltaGValmin | TPrimer | [private] |
| DeltaH(bool max) | TPrimer | [private] |
| deltaHValmax | TPrimer | [private] |
| deltaHValmin | TPrimer | [private] |
| DeltaS(bool max) | TPrimer | [private] |
| deltaSValmax | TPrimer | [private] |
| deltaSValmin | TPrimer | [private] |
| evaluate(float tm_opt=0) | TPrimer | |
| evaluateSelfAnnealing() | TPrimer | [private] |
| evaluateTm(double conc_nm=50, double Na_mm=50) | TPrimer | [private] |
| evaluation | TPrimer | [private] |
| from | TPrimer | |
| gaCount | TPrimer | [private] |
| gcCount | TPrimer | [private] |
| get35sequence() | TPrimer | |
| get53sequence() | TPrimer | |
| getAnnealingSequence() | TPrimer | [private] |
| getEvaluation() | TPrimer | |
| getGCcontents() | TPrimer | |
| getName() | TPrimer | |
| getSequenceFromVector(TVector *v, bool from3=false) | TPrimer | |
| getTm(int type=TM_STANDARD) | TPrimer | |
| ggCount | TPrimer | [private] |
| gtCount | TPrimer | [private] |
| H | TPrimer | [private] |
| invertSequence() | TPrimer | [private] |
| IsBase(wxString theBase) | TPrimer | [private] |
| IsIUpacBase(wxString theBase) | TPrimer | [private] |
| IUpairVals_max | TPrimer | [private] |
| IUpairVals_min | TPrimer | [private] |
| makeStats() | TPrimer | |
| name | TPrimer | [private] |
| NeighbourTM(bool max, double pconc, double saltconc) | TPrimer | [private] |
| OligoCount() | TPrimer | [private] |
| overlap(TPrimer &op) | TPrimer | |
| pgc | TPrimer | [private] |
| report() | TPrimer | |
| S | TPrimer | [private] |
| sequence | TPrimer | |
| setName(wxString nn) | TPrimer | |
| taCount | TPrimer | [private] |
| tm | TPrimer | [private] |
| tm_gc | TPrimer | [private] |
| tm_salt | TPrimer | [private] |
| to | TPrimer | |
| TPrimer(int _from=0, int _to=0, bool _upper=true) | TPrimer | |
| upper | TPrimer | |
| ~TPrimer() | TPrimer | [inline] |
