TProteolysis Class Reference

#include <TProteolysis.h>

List of all members.

Public Member Functions
	TProteolysis (TAminoAcids *_parent, const wxString &title)
	Constructor.
virtual	~TProteolysis ()
	Destructor.
void	OnOK (wxCommandEvent &ev)
	OK button event handler.
void	OnCancel (wxCommandEvent &ev)
	Cancel button event handler.
void	OnAll (wxCommandEvent &ev)
	"All" button event handler
void	OnNone (wxCommandEvent &ev)
	"None" button event handler
void	OnProtease (wxCommandEvent &ev)
	Protease list event handler.
void	OnIgnore (wxCommandEvent &ev)
	Ignore list event handler.
void	OnSepFragments (wxCommandEvent &ev)
	Separate fragments event handler.
void	OnSepResults (wxCommandEvent &ev)
	Separation results event handler.
void	OnCuts (wxCommandEvent &ev)
	Cut list event handler.
void	OnShowGel (wxCommandEvent &ev)
void	OnCharHook (wxKeyEvent &event)
	Key event handler.
void	OnSortResults (wxCommandEvent &event)
	Sort results event handler.
void	OnNumProts (wxCommandEvent &event)
	Number of proteases event handler.
virtual void	draw_gel (wxDC &dc)
	Draw the virtual gel.
Private Member Functions
virtual void	recalc ()
virtual void	calc_cut_list ()
virtual void	calc_fragment_list ()
virtual void	calc_spearation ()
virtual void	calc_spearation_sub (int depth, TProteaseArray &prop, vector< TFragment > &tobe, int start=0)
virtual void	show_gel ()
virtual void	show_fragment_list ()
virtual double	get_weight (int from, int to)
virtual int	get_y (double y, int h, double min, double max)
virtual void	determine_cuts (TProteaseArray &prop, TProteaseCutArray &apc)
virtual void	remove_ignored_cuts (TProteaseCutArray &apc)
virtual void	sort_cuts (TProteaseCutArray &apc)
virtual void	add_final_piece (TProteaseCutArray &apc)
virtual void	find_cutting_proteases ()
Private Attributes
TAminoAcids *	parent
TVector *	v
TStorage *	ls
wxCheckListBox *	proteases
wxCheckListBox *	ignore
wxCheckListBox *	cuts
wxCheckListBox *	results
wxCheckListBox *	sep_fragments
wxListBox *	sep_results
wxRadioBox *	sep_num_prot
wxCheckBox *	show_uncut
wxCheckBox *	create_fragments
wxCheckBox *	create_labels
wxCheckBox *	use_proteases
TProteolysisGel *	gel
TProteaseCutArray	pc
wxTextCtrl *	sep_desc
vector< TFragment >	fragments
wxRadioBox *	sortresults
vector< TProteolysisSuggestion >	suggestions
vector< TProtease * >	pr_cache
vector< TProtease * >	cutting_proteases
vector< TProteaseCutArray >	pc_cache
int	max_dep

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Constructor & Destructor Documentation

TProteolysis::TProteolysis (  TAminoAcids *  _parent, const wxString &  title )

Constructor.

TProteolysis::~TProteolysis (   )  [virtual]

Destructor.

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Member Function Documentation

void TProteolysis::add_final_piece (  TProteaseCutArray &  apc  )  [private, virtual]

void TProteolysis::calc_cut_list (   )  [private, virtual]

void TProteolysis::calc_fragment_list (   )  [private, virtual]

void TProteolysis::calc_spearation (   )  [private, virtual]

void TProteolysis::calc_spearation_sub (  int  depth, TProteaseArray &  prop, vector< TFragment > &  tobe, int  start = 0 )  [private, virtual]

void TProteolysis::determine_cuts (  TProteaseArray &  prop, TProteaseCutArray &  apc )  [private, virtual]

void TProteolysis::draw_gel (  wxDC &  dc  )  [virtual]

Draw the virtual gel.

void TProteolysis::find_cutting_proteases (   )  [private, virtual]

double TProteolysis::get_weight (  int  from, int  to )  [private, virtual]

int TProteolysis::get_y (  double  y, int  h, double  min, double  max )  [private, virtual]

void TProteolysis::OnAll (  wxCommandEvent &  ev  )

"All" button event handler

void TProteolysis::OnCancel (  wxCommandEvent &  ev  )

Cancel button event handler.

void TProteolysis::OnCharHook (  wxKeyEvent &  event  )

Key event handler.

void TProteolysis::OnCuts (  wxCommandEvent &  ev  )

Cut list event handler.

void TProteolysis::OnIgnore (  wxCommandEvent &  ev  )

Ignore list event handler.

void TProteolysis::OnNone (  wxCommandEvent &  ev  )

"None" button event handler

void TProteolysis::OnNumProts (  wxCommandEvent &  event  )

Number of proteases event handler.

void TProteolysis::OnOK (  wxCommandEvent &  ev  )

OK button event handler.

void TProteolysis::OnProtease (  wxCommandEvent &  ev  )

Protease list event handler.

void TProteolysis::OnSepFragments (  wxCommandEvent &  ev  )

Separate fragments event handler.

void TProteolysis::OnSepResults (  wxCommandEvent &  ev  )

Separation results event handler.

void TProteolysis::OnShowGel (  wxCommandEvent &  ev  )

void TProteolysis::OnSortResults (  wxCommandEvent &  event  )

Sort results event handler.

void TProteolysis::recalc (   )  [private, virtual]

void TProteolysis::remove_ignored_cuts (  TProteaseCutArray &  apc  )  [private, virtual]

void TProteolysis::show_fragment_list (   )  [private, virtual]

void TProteolysis::show_gel (   )  [private, virtual]

void TProteolysis::sort_cuts (  TProteaseCutArray &  apc  )  [private, virtual]

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Member Data Documentation

wxCheckBox * TProteolysis::create_fragments [private]

wxCheckBox * TProteolysis::create_labels [private]

wxCheckListBox * TProteolysis::cuts [private]

vector<TProtease*> TProteolysis::cutting_proteases [private]

vector<TFragment> TProteolysis::fragments [private]

TProteolysisGel* TProteolysis::gel [private]

wxCheckListBox * TProteolysis::ignore [private]

TStorage* TProteolysis::ls [private]

int TProteolysis::max_dep [private]

TAminoAcids* TProteolysis::parent [private]

TProteaseCutArray TProteolysis::pc [private]

vector<TProteaseCutArray> TProteolysis::pc_cache [private]

vector<TProtease*> TProteolysis::pr_cache [private]

wxCheckListBox* TProteolysis::proteases [private]

wxCheckListBox * TProteolysis::results [private]

wxTextCtrl* TProteolysis::sep_desc [private]

wxCheckListBox * TProteolysis::sep_fragments [private]

wxRadioBox* TProteolysis::sep_num_prot [private]

wxListBox* TProteolysis::sep_results [private]

wxCheckBox* TProteolysis::show_uncut [private]

wxRadioBox* TProteolysis::sortresults [private]

vector<TProteolysisSuggestion> TProteolysis::suggestions [private]

wxCheckBox * TProteolysis::use_proteases [private]

TVector* TProteolysis::v [private]

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/TProteolysis.h
• C:/Programme/Dev-Cpp/Mine/GENtle/TProteolysis.cpp

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