TUReadSeq Class Reference

This is a wrapper class for ureadseq, which can read many sequence formats. More...

#include <TUReadSeq.h>

List of all members.

Public Member Functions
	TUReadSeq (wxString _filename=_T(""))
	Constructor.
	~TUReadSeq ()
void	getFormat ()
	Try to determine format.
int	getSequenceNames ()
	Get the names of the sequences.
void	getSequences ()
	Get the sequences.
void	convert (TGenBank &gb)
	Convert the sequences to GenBank format.
Static Public Member Functions
static int	getSeqType (wxString t)
	Return the sequence type.
Public Attributes
short	error
Private Attributes
wxString	filename
	Name of source file.
short	format
short	numseqs
long	skiplines
wxArrayString	seq_names
wxArrayString	seqs

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Detailed Description

This is a wrapper class for ureadseq, which can read many sequence formats.

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Constructor & Destructor Documentation

TUReadSeq::TUReadSeq (  wxString  _filename = _T("")  )

Constructor.

TUReadSeq::~TUReadSeq (   )  [inline]

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Member Function Documentation

void TUReadSeq::convert (  TGenBank &  gb  )

Convert the sequences to GenBank format.

void TUReadSeq::getFormat (   )

Try to determine format.

int TUReadSeq::getSeqType (  wxString  t  )  [static]

Return the sequence type.

int TUReadSeq::getSequenceNames (   )

Get the names of the sequences.

void TUReadSeq::getSequences (   )

Get the sequences.

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Member Data Documentation

short TUReadSeq::error

wxString TUReadSeq::filename [private]

Name of source file.

short TUReadSeq::format [private]

short TUReadSeq::numseqs [private]

wxArrayString TUReadSeq::seq_names [private]

wxArrayString TUReadSeq::seqs [private]

long TUReadSeq::skiplines [private]

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The documentation for this class was generated from the following files:

• C:/Programme/Dev-Cpp/Mine/GENtle/TUReadSeq.h
• C:/Programme/Dev-Cpp/Mine/GENtle/TUReadSeq.cpp

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