Main Page | Namespace List | Class Hierarchy | Class List | Directories | File List | Class Members | File Members

TUReadSeq Class Reference

This is a wrapper class for ureadseq, which can read many sequence formats. More...

#include <TUReadSeq.h>

List of all members.

Public Member Functions

 TUReadSeq (wxString _filename=_T(""))
 Constructor.
 ~TUReadSeq ()
void getFormat ()
 Try to determine format.
int getSequenceNames ()
 Get the names of the sequences.
void getSequences ()
 Get the sequences.
void convert (TGenBank &gb)
 Convert the sequences to GenBank format.

Static Public Member Functions

static int getSeqType (wxString t)
 Return the sequence type.

Public Attributes

short error

Private Attributes

wxString filename
 Name of source file.
short format
short numseqs
long skiplines
wxArrayString seq_names
wxArrayString seqs


Detailed Description

This is a wrapper class for ureadseq, which can read many sequence formats.


Constructor & Destructor Documentation

TUReadSeq::TUReadSeq wxString  _filename = _T("")  ) 
 

Constructor.

TUReadSeq::~TUReadSeq  )  [inline]
 


Member Function Documentation

void TUReadSeq::convert TGenBank gb  ) 
 

Convert the sequences to GenBank format.

void TUReadSeq::getFormat  ) 
 

Try to determine format.

int TUReadSeq::getSeqType wxString  t  )  [static]
 

Return the sequence type.

int TUReadSeq::getSequenceNames  ) 
 

Get the names of the sequences.

void TUReadSeq::getSequences  ) 
 

Get the sequences.


Member Data Documentation

short TUReadSeq::error
 

wxString TUReadSeq::filename [private]
 

Name of source file.

short TUReadSeq::format [private]
 

short TUReadSeq::numseqs [private]
 

wxArrayString TUReadSeq::seq_names [private]
 

wxArrayString TUReadSeq::seqs [private]
 

long TUReadSeq::skiplines [private]
 


The documentation for this class was generated from the following files:
Generated on Fri Aug 11 16:19:49 2006 for GENtle by  doxygen 1.4.1