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TVector Member List

This is the complete list of members for TVector, including all inherited members.

_llTVector [private]
_luTVector [private]
_rlTVector [private]
_ruTVector [private]
aaTVector [private]
AA2DNATVector [private]
aapropTVector [private, static]
ACGTTVector [private, static]
actionTVector [private]
action_valueTVector [private]
addDescription(wxString s)TVector
addName(wxString s)TVector
addORFs(int off)TVector
addRestrictionEnzyme(TRestrictionEnzyme *e)TVector
addToSequence(wxString x)TVector
alterSequence(int pos, char c)TVector
backtranslate(wxString mode=_T(""))TVector
basematch(char b1, char b2)TVector
callUpdateUndoMenu()TVector
changedTVector [private]
circularTVector [private]
clear()TVector
ClearORFs()TVector
closeCircle()TVector
cocktailTVector
codon_table_namesTVector [private, static]
codon_tablesTVector [private, static]
COMPLEMENTTVector [private, static]
countCodonTables()TVector
countCuts(wxString enzyme)TVector
countMethylationSites()TVector
countORFs()TVector
databaseTVector [private]
descTVector [private]
displayUpdate()TVector
dna2aa(wxString codon, int translation_table=-1)TVector
doAction()TVector
doRemove(int from, int to, bool update=true, bool enableUndo=true)TVector
doRemoveNucleotide(int x)TVector
doRestriction()TVector
enzyme_rulesTVector [private]
eraseSequence(int from, int len)TVector
evaluate_key_value(wxString key, wxString value)TVector [private]
find_item(wxString s)TVector
genomeModeTVector [private]
get_translation_table(int translation_table)TVector [private]
getAAmw(char aa)TVector
getAApi(char aa)TVector
getAAprop(char a)TVector
getAAvector(int from, int to, int dir=1)TVector
getCodonTableName(int x)TVector
getComplement(char c)TVector
getCuts(TRestrictionEnzyme *e, vector< TRestrictionCut > &ret, bool clear_vector=true, int max=10000000)TVector
getDatabase()TVector [inline]
getDescription()TVector
getEnzymeRule()TVector
getEnzymeRules()TVector
getGenomeMode()TVector
getItemLength(int a)TVector
getItemsAtPosition(int pos, wxArrayInt &vi, bool limit=false)TVector
getMem()TVector
getMethylationSite(int index)TVector
getMethylationSiteIndex(int pos)TVector
getName()TVector
getNucleotide(int pos, bool complement=false)TVector
getORF(int a)TVector
getParam(wxString key)TVector
getParams()TVector
getSequence()TVector
getSequenceChar(int x)TVector
getSequenceLength()TVector
getSequencePointer()TVector
getStickyEnd(bool left, bool upper)TVector
getStrand35()TVector
getStrand53()TVector
getSubstring(int mf, int mt)TVector
getType()TVector
getVectorCuts(TVector *v)TVector
hasItemsAtPosition(int pos)TVector
hasStickyEnds()TVector
hiddenEnzymesTVector [private]
hideEnzyme(wxString s, bool hideit=true)TVector
init()TVector
insert_char(char x, int pos, bool overwrite=false)TVector
invert(wxString s)TVector [private]
isChanged()TVector [inline]
isCircular()TVector
isEnzymeHidden(wxString s)TVector
isLinear()TVector
itemsTVector
IUPACTVector [private, static]
ligate_right(TVector &v, bool inverted=false)TVector
makeAA2DNA(wxString mode=_T(""))TVector [private]
mergeCodons(wxString c1, wxString c2)TVector [private]
methylTVector [private]
methylationSites(wxArrayInt &vi, int what=ALL_METHYLATION_ENZYMES)TVector
nameTVector [private]
newFromMark(int from, int to)TVector
one2three(int a)TVector
paramkTVector [private]
paramvTVector [private]
prepareFeatureEdit(int pos, bool overwrite)TVector
proteasesTVector
rcTVector
reTVector
re2TVector
recalculateCuts()TVector
recalcvisualTVector [private]
reduceToFragment(TRestrictionCut left, TRestrictionCut right)TVector
removeAlignmentArtifacts(char what= '-')TVector
removeBlanksFromSequence()TVector
removeBlanksFromVector()TVector
resetTurn()TVector
sequenceTVector [private]
setAction(wxString _action, int _action_value=0)TVector
setChanged(bool c=true)TVector
setCircular(bool c=true)TVector
setCodonTable(int table, wxString sequence, wxString name)TVector [private]
setDatabase(wxString s)TVector [inline]
setDescription(wxString s)TVector
setEnzymeRules(TEnzymeRules *er)TVector
setFromVector(TVector &v)TVector
setGenomeMode(bool gm=true)TVector
setIUPAC(char b, wxString s, char *pac=NULL)TVector
setName(wxString s)TVector
setNucleotide(int pos, char t)TVector
setParam(wxString key, wxString value)TVector
setParams(wxString t)TVector
setSequence(wxString ns)TVector
setStickyEnd(bool left, bool upper, wxString s)TVector
setType(int newtype)TVector
setWindow(ChildBase *c)TVector
showGC()TVector
SIUPACTVector [private, static]
sortRestrictionSites()TVector
three2one(wxString s)TVector
transformSequence(bool inverse, bool reverse)TVector
turn(int off)TVector
turnedTVector [private]
TVector(ChildBase *win=NULL)TVector
typeTVector [private]
undoTVector
updateDisplay(bool update=true)TVector
vary_base(char b)TVector [private]
windowTVector [private]
worfTVector [private]
~TVector()TVector


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