| _ll | TVector | [private] |
| _lu | TVector | [private] |
| _rl | TVector | [private] |
| _ru | TVector | [private] |
| aa | TVector | [private] |
| AA2DNA | TVector | [private] |
| aaprop | TVector | [private, static] |
| ACGT | TVector | [private, static] |
| action | TVector | [private] |
| action_value | TVector | [private] |
| addDescription(wxString s) | TVector | |
| addName(wxString s) | TVector | |
| addORFs(int off) | TVector | |
| addRestrictionEnzyme(TRestrictionEnzyme *e) | TVector | |
| addToSequence(wxString x) | TVector | |
| alterSequence(int pos, char c) | TVector | |
| backtranslate(wxString mode=_T("")) | TVector | |
| basematch(char b1, char b2) | TVector | |
| callUpdateUndoMenu() | TVector | |
| changed | TVector | [private] |
| circular | TVector | [private] |
| clear() | TVector | |
| ClearORFs() | TVector | |
| closeCircle() | TVector | |
| cocktail | TVector | |
| codon_table_names | TVector | [private, static] |
| codon_tables | TVector | [private, static] |
| COMPLEMENT | TVector | [private, static] |
| countCodonTables() | TVector | |
| countCuts(wxString enzyme) | TVector | |
| countMethylationSites() | TVector | |
| countORFs() | TVector | |
| database | TVector | [private] |
| desc | TVector | [private] |
| displayUpdate() | TVector | |
| dna2aa(wxString codon, int translation_table=-1) | TVector | |
| doAction() | TVector | |
| doRemove(int from, int to, bool update=true, bool enableUndo=true) | TVector | |
| doRemoveNucleotide(int x) | TVector | |
| doRestriction() | TVector | |
| enzyme_rules | TVector | [private] |
| eraseSequence(int from, int len) | TVector | |
| evaluate_key_value(wxString key, wxString value) | TVector | [private] |
| find_item(wxString s) | TVector | |
| genomeMode | TVector | [private] |
| get_translation_table(int translation_table) | TVector | [private] |
| getAAmw(char aa) | TVector | |
| getAApi(char aa) | TVector | |
| getAAprop(char a) | TVector | |
| getAAvector(int from, int to, int dir=1) | TVector | |
| getCodonTableName(int x) | TVector | |
| getComplement(char c) | TVector | |
| getCuts(TRestrictionEnzyme *e, vector< TRestrictionCut > &ret, bool clear_vector=true, int max=10000000) | TVector | |
| getDatabase() | TVector | [inline] |
| getDescription() | TVector | |
| getEnzymeRule() | TVector | |
| getEnzymeRules() | TVector | |
| getGenomeMode() | TVector | |
| getItemLength(int a) | TVector | |
| getItemsAtPosition(int pos, wxArrayInt &vi, bool limit=false) | TVector | |
| getMem() | TVector | |
| getMethylationSite(int index) | TVector | |
| getMethylationSiteIndex(int pos) | TVector | |
| getName() | TVector | |
| getNucleotide(int pos, bool complement=false) | TVector | |
| getORF(int a) | TVector | |
| getParam(wxString key) | TVector | |
| getParams() | TVector | |
| getSequence() | TVector | |
| getSequenceChar(int x) | TVector | |
| getSequenceLength() | TVector | |
| getSequencePointer() | TVector | |
| getStickyEnd(bool left, bool upper) | TVector | |
| getStrand35() | TVector | |
| getStrand53() | TVector | |
| getSubstring(int mf, int mt) | TVector | |
| getType() | TVector | |
| getVectorCuts(TVector *v) | TVector | |
| hasItemsAtPosition(int pos) | TVector | |
| hasStickyEnds() | TVector | |
| hiddenEnzymes | TVector | [private] |
| hideEnzyme(wxString s, bool hideit=true) | TVector | |
| init() | TVector | |
| insert_char(char x, int pos, bool overwrite=false) | TVector | |
| invert(wxString s) | TVector | [private] |
| isChanged() | TVector | [inline] |
| isCircular() | TVector | |
| isEnzymeHidden(wxString s) | TVector | |
| isLinear() | TVector | |
| items | TVector | |
| IUPAC | TVector | [private, static] |
| ligate_right(TVector &v, bool inverted=false) | TVector | |
| makeAA2DNA(wxString mode=_T("")) | TVector | [private] |
| mergeCodons(wxString c1, wxString c2) | TVector | [private] |
| methyl | TVector | [private] |
| methylationSites(wxArrayInt &vi, int what=ALL_METHYLATION_ENZYMES) | TVector | |
| name | TVector | [private] |
| newFromMark(int from, int to) | TVector | |
| one2three(int a) | TVector | |
| paramk | TVector | [private] |
| paramv | TVector | [private] |
| prepareFeatureEdit(int pos, bool overwrite) | TVector | |
| proteases | TVector | |
| rc | TVector | |
| re | TVector | |
| re2 | TVector | |
| recalculateCuts() | TVector | |
| recalcvisual | TVector | [private] |
| reduceToFragment(TRestrictionCut left, TRestrictionCut right) | TVector | |
| removeAlignmentArtifacts(char what= '-') | TVector | |
| removeBlanksFromSequence() | TVector | |
| removeBlanksFromVector() | TVector | |
| resetTurn() | TVector | |
| sequence | TVector | [private] |
| setAction(wxString _action, int _action_value=0) | TVector | |
| setChanged(bool c=true) | TVector | |
| setCircular(bool c=true) | TVector | |
| setCodonTable(int table, wxString sequence, wxString name) | TVector | [private] |
| setDatabase(wxString s) | TVector | [inline] |
| setDescription(wxString s) | TVector | |
| setEnzymeRules(TEnzymeRules *er) | TVector | |
| setFromVector(TVector &v) | TVector | |
| setGenomeMode(bool gm=true) | TVector | |
| setIUPAC(char b, wxString s, char *pac=NULL) | TVector | |
| setName(wxString s) | TVector | |
| setNucleotide(int pos, char t) | TVector | |
| setParam(wxString key, wxString value) | TVector | |
| setParams(wxString t) | TVector | |
| setSequence(wxString ns) | TVector | |
| setStickyEnd(bool left, bool upper, wxString s) | TVector | |
| setType(int newtype) | TVector | |
| setWindow(ChildBase *c) | TVector | |
| showGC() | TVector | |
| SIUPAC | TVector | [private, static] |
| sortRestrictionSites() | TVector | |
| three2one(wxString s) | TVector | |
| transformSequence(bool inverse, bool reverse) | TVector | |
| turn(int off) | TVector | |
| turned | TVector | [private] |
| TVector(ChildBase *win=NULL) | TVector | |
| type | TVector | [private] |
| undo | TVector | |
| updateDisplay(bool update=true) | TVector | |
| vary_base(char b) | TVector | [private] |
| window | TVector | [private] |
| worf | TVector | [private] |
| ~TVector() | TVector | |
