#include <stdio.h>#include <string.h>#include <stdlib.h>#include "clustalw.h"#include <wx/wx.h>Functions | |
| void * | ckalloc (size_t) |
| void | init_amenu (void) |
| void | init_interface (void) |
| void | init_matrix (void) |
| void | fill_chartab (void) |
| void | parse_params (Boolean) |
| void | main_menu (void) |
| int | clustalw_main (int argc, char **argv) |
Variables | |
| double ** | tmat |
| char | revision_level [] = "W (1.83)" |
| Boolean | interactive = FALSE |
| char * | help_file_name = "clustalw.hlp" |
| sint | max_names |
| float | gap_open |
| float | gap_extend |
| float | pw_go_penalty |
| float | pw_ge_penalty |
| FILE * | tree |
| FILE * | clustal_outfile |
| FILE * | gcg_outfile |
| FILE * | nbrf_outfile |
| FILE * | phylip_outfile |
| FILE * | gde_outfile |
| FILE * | nexus_outfile |
| FILE * | fasta_outfile |
| sint * | seqlen_array |
| sint | max_aln_length |
| short | usermat [NUMRES][NUMRES] |
| short | pw_usermat [NUMRES][NUMRES] |
| short | def_aa_xref [NUMRES+1] |
| short | aa_xref [NUMRES+1] |
| short | pw_aa_xref [NUMRES+1] |
| short | userdnamat [NUMRES][NUMRES] |
| short | pw_userdnamat [NUMRES][NUMRES] |
| short | def_dna_xref [NUMRES+1] |
| short | dna_xref [NUMRES+1] |
| short | pw_dna_xref [NUMRES+1] |
| sint | nseqs |
| sint | nsets |
| sint * | output_index |
| sint ** | sets |
| sint * | seq_weight |
| sint | max_aa |
| sint | gap_pos1 |
| sint | gap_pos2 |
| sint | mat_avscore |
| sint | profile_no |
| Boolean | usemenu |
| Boolean | dnaflag |
| Boolean | distance_tree |
| char ** | seq_array |
| char ** | names |
| char ** | titles |
| char ** | args |
| char | seqname [FILENAMELEN+1] |
| char * | gap_penalty_mask1 = NULL |
| char * | gap_penalty_mask2 = NULL |
| char * | sec_struct_mask1 = NULL |
| char * | sec_struct_mask2 = NULL |
| sint | struct_penalties |
| char * | ss_name1 = NULL |
| char * | ss_name2 = NULL |
| Boolean | user_series = FALSE |
| UserMatSeries | matseries |
| short | usermatseries [MAXMAT][NUMRES][NUMRES] |
| short | aa_xrefseries [MAXMAT][NUMRES+1] |
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1.4.1