GENtle Directory Reference

Directories
directory	clustalw
directory	coils
directory	ipc
directory	tinyxml
Files
file	ABItype.cpp
	Contains the ABItype class, as well as its TFLAG helper class.
file	ABItype.h
	Contains the ABItype class, as well as its TFLAG helper class.
file	ABIviewer.cpp
	Contains the TABIviewer class members.
file	ABIviewer.h
	Contains the TABIviewer class.
file	Alignment.cpp
	Contains the methods of the TAlignment class and its helper class, TAlignLine.
file	Alignment.h
	Contains the TAlignment class and its helper class, TAlignLine.
file	AlignmentAppearanceDialog.cpp
file	AlignmentAppearanceDialog.h
	Contains the AlignmentAppearanceDialog class.
file	AminoAcids.cpp
	Contains the TAminoAcids module class methods.
file	AminoAcids.h
	Contains the TAminoAcids module class.
file	AutoAnnotate.cpp
	Contains the AutoAnnotate class members, as well as the complete TAutoAnnotateDialog class.
file	AutoAnnotate.h
	Contains the AutoAnnotate class.
file	CGview.cpp
file	CGview.h
	Contains the CGview class, which deals with CGview export.
file	ChildBase.cpp
	Contains the ChildBase class.
file	ChildBase.h
	Contains the ChildBase class.
file	CloneManager.cpp
file	CloneManager.h
file	CloningAssistant.cpp
file	CloningAssistant.h
file	CoolCanvas.cpp
file	CoolCanvas.h
file	countlines.php
file	enums.h
file	ExternalBLAST.cpp
	Contains the EIpanel methods and the blastThread helper class.
file	ExternalInterface.cpp
	Contains the ExternalInterface, EIpanel and EILB class members.
file	ExternalInterface.h
	Contains the ExternalInterface and its helper classes.
file	ExternalNCBI.cpp
	Contains the EIpanel functions for NCBI.
file	FindSequenceDialog.cpp
	Contains the FindSequenceDialog class members.
file	FindSequenceDialog.h
	Contains the FindSequenceDialog class.
file	GenBank.cpp
	Contains the GenBank class and its TGenBankFeature helper class.
file	GenBank.h
	Contains the GenBank class and its TGenBankFeature helper class.
file	GENtle_private.h
file	lin_sqlite.h
file	lin_sqlite3.h
file	mac_sqlite2.h
file	mac_sqlite3.h
file	main.cpp
	Contains global functions, includes, and the MyApp class.
file	main.h
	Contains defines, global functions, includes, and the MyApp class.
file	ManageDatabase.cpp
file	ManageDatabase.h
	Contains the TManageDatabaseDialog class and its helper classes, TMyDropTarget and TMySQLDialog.
file	MiscDialogs.cpp
	Contains the class members for various dialogs.
file	MiscDialogs.h
	Contains several (minor) dialogs and their helper classes.
file	MyChild.cpp
	Contains the MyChild class, as well as the MySplitter helper class.
file	MyChild.h
	Contains the MyChild class, as well as the MySplitter helper class.
file	MyFrame.cpp
file	MyFrame.h
	Contains classes MyFrame, TProject, MyFrameDropTarget, and TTestSuite (only when compiled with MYTEST).
file	ncoils.cpp
file	ncoils.h
file	OnlineTools.cpp
file	OnlineTools.h
	Contains the TOnlineTools class.
file	PCR_Troubleshoot.cpp
file	PCR_Troubleshoot.h
	Contains the FindSequenceDialog class.
file	PlasmidCanvas.cpp
file	PlasmidCanvas.h
	Contains the PlasmidCanvas class.
file	PlasmidCanvasCircular.cpp
file	PlasmidCanvasHandlers.cpp
file	PlasmidCanvasLinear.cpp
file	PrimerDesign.cpp
	Contains the methods of the TPrimerDesign module class.
file	PrimerDesign.h
	Contains the TPrimerDesign module class.
file	ProgramOptionsDialog.cpp
	Contains the members of the ProgramOptionsDialog class and its helper classes, TEnzymeSettingsTab (which is also used in TVectorEditor) and TEnzymeRules.
file	ProgramOptionsDialog.h
	Contains the ProgramOptionsDialog class and its helper classes, TEnzymeSettingsTab (which is also used in TVectorEditor) and TEnzymeRules.
file	RestrictionEnzymes.cpp
	Contains the TRestrictionEnzyme, TRestrictionCut, TProtease, and TProteaseCut classes.
file	RestrictionEnzymes.h
	Contains the TRestrictionEnzyme, TRestrictionCut, TProtease, and TProteaseCut classes.
file	SendHTTP.cpp
	Contains the myExternal class.
file	SendHTTP.h
	Contains the myExternal class.
file	SequenceCanvas.cpp
	Contains the SequenceCanvas, SequencePartList, and SeqPos class members.
file	SequenceCanvas.h
	Contains the classes SequenceCanvas, SeqBasic and its children, and the SequencePartList and SeqPos helper classes.
file	SequenceTypeAA.cpp
	Contains the SeqAA class members.
file	SequenceTypeAAstructure.cpp
	Contains the SeqAAstructure class members.
file	SequenceTypeABI.cpp
	Contains the SeqABI class members.
file	SequenceTypeAlign.cpp
	Contains the SeqAlign class members.
file	SequenceTypeDNA.cpp
	Contains the SeqDNA class members.
file	SequenceTypeFeature.cpp
	Contains the SeqFeature class members.
file	SequenceTypePlot.cpp
	Contains the SeqPlot class members.
file	SequenceTypeRestriction.cpp
	Contains the SeqRestriction class members.
file	SequenceTypes.cpp
	Contains the SeqBasic, SeqPrimer, SeqNum, and SeqDivider class members.
file	TAlignmentDialog.cpp
	Contains the methods of the TAlignmentDialog class.
file	TAlignmentDialog.h
	Contains the TAlignmentDialog class.
file	TCalculator.cpp
file	TCalculator.h
	Contains the TImageDisplay class, as well as the TMyImagePanel helper class.
file	TClone.cpp
file	TClone.h
	Contains the TClone CLONE import/export class, and helper classes.
file	TextImportDialog.cpp
	Contains the members of the TextImportDialog class.
file	TextImportDialog.h
	Contains the TextImportDialog class.
file	TGraph.cpp
file	TGraph.h
	Contains the TGraph class and its helper classes.
file	TGraphDisplay.cpp
file	TGraphScale.cpp
file	TImageDisplay.cpp
file	TImageDisplay.h
	Contains the TImageDisplay class, as well as the TMyImagePanel helper class.
file	TIMGreader.cpp
	Contains the TIMGreader class, and its TIMGitem helper class.
file	TIMGreader.h
	Contains the TIMGreader class, and its TIMGitem helper class.
file	TItemEditDialog.cpp
	Contains the methods of the TItemEditDialog class.
file	TItemEditDialog.h
	Contains the TItemEditDialog class.
file	TLigationDialog.cpp
	Contains the methods of the TLigationDialog class.
file	TLigationDialog.h
	Contains the TLigationDialog class.
file	TMainTree.cpp
file	TMainTree.h
	Contains the TMainTree and TMainTreeItem classes.
file	todo.cpp
file	TPDB.cpp
	TPDB class, and its tseqres helper class.
file	TPDB.h
	TPDB class, and its tseqres helper class.
file	TPhylip.cpp
file	TPhylip.h
file	TPhyloTree.cpp
file	TPhyloTree.h
file	TPrimer.cpp
	The TPrimer class.
file	TPrimer.h
	The TPrimer class.
file	TPrimerDialog.cpp
	Contains the methods of the TPrimerDialog class.
file	TPrimerDialog.h
	Contains the TPrimerDialog class.
file	TProteolysis.cpp
file	TProteolysis.h
file	TRestrictionEditor.cpp
	Contains the TRestrictionEditor class members.
file	TRestrictionEditor.h
	Contains the TRestrictionEditor class, as well as the TREcache and TFragment helper class.
file	TSequencingAssistantDialog.cpp
file	TSequencingAssistantDialog.h
file	TSilmutDialog.cpp
	Contains the methods of the TSilmutDialog class, and its helper class TSilmutItem.
file	TSilmutDialog.h
	Contains the TSilmutDialog class, and its helper class TSilmutItem.
file	TStorage.cpp
	The TStorage and TSQLresult classes.
file	TStorage.h
	The TStorage and TSQLresult classes.
file	TUndo.cpp
	The TUndo class.
file	TUndo.h
	The TUndo class.
file	TUReadSeq.cpp
	The TUReadSeq class.
file	TUReadSeq.h
	The TUReadSeq class.
file	TVector.cpp
file	TVector.h
	Contains the TVector class, as well as helper classes TAAProp, TORF, Tdna2aa, and TVectorItem.
file	TVectorEditor.cpp
	Contains the TVectorEditor class methods.
file	TVectorEditor.h
	Contains the TVectorEditor class.
file	TVectorEditorEnzymes.cpp
	Contains the TVectorEditor class methods concerning enzymes.
file	TVectorEditorItems.cpp
	Contains the TVectorEditor class methods concerning items.
file	TVectorTree.cpp
	The vector items tree component.
file	TVectorTree.h
	The vector items tree component.
file	TVirtualGel.cpp
file	TVirtualGel.h
	Contains the TVirtualGel class, as well as the TGelLane and TMyGelControl helper classes.
file	TXMLfile.cpp
	The TXMLfile class.
file	TXMLfile.h
	The TXMLfile class.
file	ureadseq.c
file	ureadseq.h
file	win_sqlite.h
file	win_sqlite3.h

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