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GENtle Directory Reference


Directories

directory  clustalw
directory  coils
directory  ipc
directory  tinyxml

Files

file  ABItype.cpp
 Contains the ABItype class, as well as its TFLAG helper class.
file  ABItype.h
 Contains the ABItype class, as well as its TFLAG helper class.
file  ABIviewer.cpp
 Contains the TABIviewer class members.
file  ABIviewer.h
 Contains the TABIviewer class.
file  Alignment.cpp
 Contains the methods of the TAlignment class and its helper class, TAlignLine.
file  Alignment.h
 Contains the TAlignment class and its helper class, TAlignLine.
file  AlignmentAppearanceDialog.cpp
file  AlignmentAppearanceDialog.h
 Contains the AlignmentAppearanceDialog class.
file  AminoAcids.cpp
 Contains the TAminoAcids module class methods.
file  AminoAcids.h
 Contains the TAminoAcids module class.
file  AutoAnnotate.cpp
 Contains the AutoAnnotate class members, as well as the complete TAutoAnnotateDialog class.
file  AutoAnnotate.h
 Contains the AutoAnnotate class.
file  CGview.cpp
file  CGview.h
 Contains the CGview class, which deals with CGview export.
file  ChildBase.cpp
 Contains the ChildBase class.
file  ChildBase.h
 Contains the ChildBase class.
file  CloneManager.cpp
file  CloneManager.h
file  CloningAssistant.cpp
file  CloningAssistant.h
file  CoolCanvas.cpp
file  CoolCanvas.h
file  countlines.php
file  enums.h
file  ExternalBLAST.cpp
 Contains the EIpanel methods and the blastThread helper class.
file  ExternalInterface.cpp
 Contains the ExternalInterface, EIpanel and EILB class members.
file  ExternalInterface.h
 Contains the ExternalInterface and its helper classes.
file  ExternalNCBI.cpp
 Contains the EIpanel functions for NCBI.
file  FindSequenceDialog.cpp
 Contains the FindSequenceDialog class members.
file  FindSequenceDialog.h
 Contains the FindSequenceDialog class.
file  GenBank.cpp
 Contains the GenBank class and its TGenBankFeature helper class.
file  GenBank.h
 Contains the GenBank class and its TGenBankFeature helper class.
file  GENtle_private.h
file  lin_sqlite.h
file  lin_sqlite3.h
file  mac_sqlite2.h
file  mac_sqlite3.h
file  main.cpp
 Contains global functions, includes, and the MyApp class.
file  main.h
 Contains defines, global functions, includes, and the MyApp class.
file  ManageDatabase.cpp
file  ManageDatabase.h
 Contains the TManageDatabaseDialog class and its helper classes, TMyDropTarget and TMySQLDialog.
file  MiscDialogs.cpp
 Contains the class members for various dialogs.
file  MiscDialogs.h
 Contains several (minor) dialogs and their helper classes.
file  MyChild.cpp
 Contains the MyChild class, as well as the MySplitter helper class.
file  MyChild.h
 Contains the MyChild class, as well as the MySplitter helper class.
file  MyFrame.cpp
file  MyFrame.h
 Contains classes MyFrame, TProject, MyFrameDropTarget, and TTestSuite (only when compiled with MYTEST).
file  ncoils.cpp
file  ncoils.h
file  OnlineTools.cpp
file  OnlineTools.h
 Contains the TOnlineTools class.
file  PCR_Troubleshoot.cpp
file  PCR_Troubleshoot.h
 Contains the FindSequenceDialog class.
file  PlasmidCanvas.cpp
file  PlasmidCanvas.h
 Contains the PlasmidCanvas class.
file  PlasmidCanvasCircular.cpp
file  PlasmidCanvasHandlers.cpp
file  PlasmidCanvasLinear.cpp
file  PrimerDesign.cpp
 Contains the methods of the TPrimerDesign module class.
file  PrimerDesign.h
 Contains the TPrimerDesign module class.
file  ProgramOptionsDialog.cpp
 Contains the members of the ProgramOptionsDialog class and its helper classes, TEnzymeSettingsTab (which is also used in TVectorEditor) and TEnzymeRules.
file  ProgramOptionsDialog.h
 Contains the ProgramOptionsDialog class and its helper classes, TEnzymeSettingsTab (which is also used in TVectorEditor) and TEnzymeRules.
file  RestrictionEnzymes.cpp
 Contains the TRestrictionEnzyme, TRestrictionCut, TProtease, and TProteaseCut classes.
file  RestrictionEnzymes.h
 Contains the TRestrictionEnzyme, TRestrictionCut, TProtease, and TProteaseCut classes.
file  SendHTTP.cpp
 Contains the myExternal class.
file  SendHTTP.h
 Contains the myExternal class.
file  SequenceCanvas.cpp
 Contains the SequenceCanvas, SequencePartList, and SeqPos class members.
file  SequenceCanvas.h
 Contains the classes SequenceCanvas, SeqBasic and its children, and the SequencePartList and SeqPos helper classes.
file  SequenceTypeAA.cpp
 Contains the SeqAA class members.
file  SequenceTypeAAstructure.cpp
 Contains the SeqAAstructure class members.
file  SequenceTypeABI.cpp
 Contains the SeqABI class members.
file  SequenceTypeAlign.cpp
 Contains the SeqAlign class members.
file  SequenceTypeDNA.cpp
 Contains the SeqDNA class members.
file  SequenceTypeFeature.cpp
 Contains the SeqFeature class members.
file  SequenceTypePlot.cpp
 Contains the SeqPlot class members.
file  SequenceTypeRestriction.cpp
 Contains the SeqRestriction class members.
file  SequenceTypes.cpp
 Contains the SeqBasic, SeqPrimer, SeqNum, and SeqDivider class members.
file  TAlignmentDialog.cpp
 Contains the methods of the TAlignmentDialog class.
file  TAlignmentDialog.h
 Contains the TAlignmentDialog class.
file  TCalculator.cpp
file  TCalculator.h
 Contains the TImageDisplay class, as well as the TMyImagePanel helper class.
file  TClone.cpp
file  TClone.h
 Contains the TClone CLONE import/export class, and helper classes.
file  TextImportDialog.cpp
 Contains the members of the TextImportDialog class.
file  TextImportDialog.h
 Contains the TextImportDialog class.
file  TGraph.cpp
file  TGraph.h
 Contains the TGraph class and its helper classes.
file  TGraphDisplay.cpp
file  TGraphScale.cpp
file  TImageDisplay.cpp
file  TImageDisplay.h
 Contains the TImageDisplay class, as well as the TMyImagePanel helper class.
file  TIMGreader.cpp
 Contains the TIMGreader class, and its TIMGitem helper class.
file  TIMGreader.h
 Contains the TIMGreader class, and its TIMGitem helper class.
file  TItemEditDialog.cpp
 Contains the methods of the TItemEditDialog class.
file  TItemEditDialog.h
 Contains the TItemEditDialog class.
file  TLigationDialog.cpp
 Contains the methods of the TLigationDialog class.
file  TLigationDialog.h
 Contains the TLigationDialog class.
file  TMainTree.cpp
file  TMainTree.h
 Contains the TMainTree and TMainTreeItem classes.
file  todo.cpp
file  TPDB.cpp
 TPDB class, and its tseqres helper class.
file  TPDB.h
 TPDB class, and its tseqres helper class.
file  TPhylip.cpp
file  TPhylip.h
file  TPhyloTree.cpp
file  TPhyloTree.h
file  TPrimer.cpp
 The TPrimer class.
file  TPrimer.h
 The TPrimer class.
file  TPrimerDialog.cpp
 Contains the methods of the TPrimerDialog class.
file  TPrimerDialog.h
 Contains the TPrimerDialog class.
file  TProteolysis.cpp
file  TProteolysis.h
file  TRestrictionEditor.cpp
 Contains the TRestrictionEditor class members.
file  TRestrictionEditor.h
 Contains the TRestrictionEditor class, as well as the TREcache and TFragment helper class.
file  TSequencingAssistantDialog.cpp
file  TSequencingAssistantDialog.h
file  TSilmutDialog.cpp
 Contains the methods of the TSilmutDialog class, and its helper class TSilmutItem.
file  TSilmutDialog.h
 Contains the TSilmutDialog class, and its helper class TSilmutItem.
file  TStorage.cpp
 The TStorage and TSQLresult classes.
file  TStorage.h
 The TStorage and TSQLresult classes.
file  TUndo.cpp
 The TUndo class.
file  TUndo.h
 The TUndo class.
file  TUReadSeq.cpp
 The TUReadSeq class.
file  TUReadSeq.h
 The TUReadSeq class.
file  TVector.cpp
file  TVector.h
 Contains the TVector class, as well as helper classes TAAProp, TORF, Tdna2aa, and TVectorItem.
file  TVectorEditor.cpp
 Contains the TVectorEditor class methods.
file  TVectorEditor.h
 Contains the TVectorEditor class.
file  TVectorEditorEnzymes.cpp
 Contains the TVectorEditor class methods concerning enzymes.
file  TVectorEditorItems.cpp
 Contains the TVectorEditor class methods concerning items.
file  TVectorTree.cpp
 The vector items tree component.
file  TVectorTree.h
 The vector items tree component.
file  TVirtualGel.cpp
file  TVirtualGel.h
 Contains the TVirtualGel class, as well as the TGelLane and TMyGelControl helper classes.
file  TXMLfile.cpp
 The TXMLfile class.
file  TXMLfile.h
 The TXMLfile class.
file  ureadseq.c
file  ureadseq.h
file  win_sqlite.h
file  win_sqlite3.h

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