Here is a list of all file members with links to the files they belong to:
- a
: random.cpp, random.c
- A3
: xmenu.h
- A4
: xmenu.h
- A___
: enums.h
- AA_ALL
: enums.h
- AA_FONTSIZE
: enums.h
- AA_IP
: enums.h
- AA_KNOWN
: enums.h
- AA_LB
: enums.h
- AA_MAIN
: enums.h
- AA_NONE
: enums.h
- AA_ONE
: enums.h
- AA_PROTEOLYSIS
: enums.h
- AA_THREE
: enums.h
- AA_THREE_1
: enums.h
- AA_THREE_2
: enums.h
- AA_THREE_3
: enums.h
- AA_THREE_M1
: enums.h
- AA_THREE_M2
: enums.h
- AA_THREE_M3
: enums.h
- aa_xref
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- aa_xrefseries
: readmat.cpp, readmat.c, clustalw.cpp, clustalw.c
- AAs
: ncoils.cpp, ncoils.h, main.h
- ABI_HEIGHT
: enums.h
- ABI_HELPLINES
: enums.h
- ABI_INV_COMP
: enums.h
- ABI_SLIDER
: enums.h
- ABI_VIEW_ONLY
: enums.h
- ABI_WIDTH
: enums.h
- ACC_ENT
: MyFrame.cpp
- accum
: showpair.cpp, showpair.c
- ACTION_MODE_LOAD
: ManageDatabase.h
- ACTION_MODE_MANAGE
: ManageDatabase.h
- ACTION_MODE_PROJECT
: ManageDatabase.h
- ACTION_MODE_SAVE
: ManageDatabase.h
- ACTION_MODE_STARTUP
: ManageDatabase.h
- add()
: palign.cpp, palign.c
- add_ggaps()
: prfalign.cpp, prfalign.c
- add_ggaps_mask()
: prfalign.cpp, prfalign.c
- addinfo()
: ureadseq.c
- addrand()
: random.cpp, random.c, clustalw.h
- addrandinit()
: random.cpp, random.c, clustalw.h
- addseq()
: ureadseq.c
- AL_ADD
: enums.h
- AL_ALG
: enums.h
- AL_ALL
: enums.h
- AL_CANCEL
: enums.h
- AL_CUR
: enums.h
- AL_DEL
: enums.h
- AL_DOWN
: enums.h
- AL_MATCH
: enums.h
- AL_MATRIX
: enums.h
- AL_MISMATCH
: enums.h
- AL_OK
: enums.h
- AL_PENALTY
: enums.h
- AL_UP
: enums.h
- ALG_CW
: Alignment.h
- ALG_NW
: Alignment.h
- ALG_SW
: Alignment.h
- align()
: interfac.cpp, interfac.c, clustalw.h
- ALIGN_APPEARANCE
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON1
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON2
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON3
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON4
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON5
: enums.h
- ALIGN_APPEARANCE_LINE_COLOR_BUTTON6
: enums.h
- ALIGN_APPEARANCE_RESET
: enums.h
- ALIGN_APPEARANCE_TEXT_BACKGROUND
: enums.h
- ALIGN_APPEARANCE_TEXT_FOREGROUND
: enums.h
- ALIGN_BOLD
: enums.h
- ALIGN_CONS
: enums.h
- ALIGN_FEAT
: enums.h
- ALIGN_HORIZ
: enums.h
- ALIGN_IDENT
: enums.h
- ALIGN_INVS
: enums.h
- ALIGN_MONO
: enums.h
- ALIGN_NORM
: enums.h
- ALIGN_RNA
: enums.h
- ALIGN_SEQ
: enums.h
- ALIGN_SIML
: enums.h
- ALIGN_SOA
: enums.h
- ALIGN_SOAI
: enums.h
- ALIGNED
: clustalw.h
- alignment
: prfalign.cpp, prfalign.c
- alignment_len
: prfalign.cpp, prfalign.c
- ALIGNMENT_SETTINGS
: enums.h
- ALL_METHYLATION_ENZYMES
: main.h
- alloc_aln()
: util.cpp, util.c, clustalw.h
- alloc_seq()
: util.cpp, util.c, clustalw.h
- allsymbols
: ureadseq.c
- aln_len
: prfalign.cpp, prfalign.c
- aln_path1
: prfalign.cpp, prfalign.c
- aln_path2
: prfalign.cpp, prfalign.c
- aln_pos
: xmenu.h
- aln_score()
: clustalw.h, alnscore.cpp, alnscore.c
- aln_weight
: prfalign.cpp, prfalign.c
- amino_acid_codes
: trees.cpp, trees.c, sequence.cpp, sequence.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, interfac.cpp, interfac.c, calcgap.cpp, calcgap.c
- amino_acid_order
: matrices.h
- AMINOACIDS_BLAST_AA
: enums.h
- AMINOACIDS_DESC
: enums.h
- AMINOACIDS_EDIT_NAME
: enums.h
- AMINOACIDS_PHOTOMETER
: enums.h
- AMINOACIDS_SETTINGS
: enums.h
- aminos
: ureadseq.c
- args
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- av
: trees.cpp, trees.c
- avail()
: calctree.cpp, calctree.c
- BACK_LEFT
: Alignment.h
- BACK_LU
: Alignment.h
- BACK_UP
: Alignment.h
- BADSIG
: amenu.cpp, amenu.c
- black_on_white()
: xmenu.h
- blank_to_()
: util.cpp, util.c, clustalw.h
- blankline()
: util.cpp, util.c, clustalw.h
- blosum30mt
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- blosum40mt
: prfalign.cpp, prfalign.c, matrices.h
- blosum45mt
: prfalign.cpp, prfalign.c, matrices.h, alnscore.cpp, alnscore.c
- blosum62mt2
: prfalign.cpp, prfalign.c, matrices.h
- blosum80mt
: prfalign.cpp, prfalign.c, matrices.h
- Boolean
: general.h
- boolean
: ureadseq.h
- boot_ntrials
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c
- boot_positions
: trees.cpp, trees.c
- boot_ran_seed
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c
- boot_totals
: trees.cpp, trees.c
- bootlabels_arg
: param.h
- bootstrap_format
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- bootstrap_tree()
: trees.cpp, trees.c, clustalw.h
- BS_BRANCH_LABELS
: clustalw.h
- BS_NODE_LABELS
: clustalw.h
- BY_CUTS
: TRestrictionEditor.cpp
- BY_NAME
: TRestrictionEditor.cpp
- calc_colscore()
: xmenu.h
- calc_gap_coeff()
: clustalw.h, calcgap.cpp, calcgap.c
- calc_gap_penalty_mask()
: interfac.cpp, interfac.c
- calc_h_penalties()
: calcgap.cpp, calcgap.c
- calc_mean()
: calctree.cpp, calctree.c
- calc_p_penalties()
: calcgap.cpp, calcgap.c
- calc_percidentity()
: interfac.cpp, interfac.c, clustalw.h
- calc_prf1()
: clustalw.h, calcprf1.cpp, calcprf1.c
- calc_prf2()
: clustalw.h, calcprf2.cpp, calcprf2.c
- calc_root_mean()
: calctree.cpp, calctree.c
- calc_score()
: palign.cpp, palign.c
- calc_seg_exceptions()
: xmenu.h
- calc_segment_exceptions()
: xmenu.h
- calc_seq_weights()
: clustalw.h, calctree.cpp, calctree.c
- calc_similarities()
: clustalw.h, calctree.cpp, calctree.c
- calc_v_penalties()
: calcgap.cpp, calcgap.c
- calc_weight()
: calctree.cpp, calctree.c
- callback()
: TStorage.cpp
- case_arg
: param.h
- CGVIEW_CHOOSE_BACKGROUND_COLOR
: enums.h
- CGVIEW_CHOOSE_JAR
: enums.h
- CGVIEW_RUN_CGVIEWER
: enums.h
- ch
: calctree.cpp, calctree.c
- CHAR2WX
: main.h
- chartab
: sequence.cpp, sequence.c
- check_dnaflag()
: sequence.cpp, sequence.c
- check_infile()
: sequence.cpp, sequence.c
- check_menus()
: xmenu.h
- check_param()
: interfac.cpp, interfac.c
- check_tree
: interfac.cpp, interfac.c
- ckalloc()
: util.cpp, util.c, clustalw.h, clustalw.cpp, clustalw.c
- ckfree()
: util.cpp, util.c, clustalw.h
- ckrealloc()
: util.cpp, util.c, clustalw.h
- cl_blankline()
: sequence.cpp, sequence.c
- cl_seq_numbers
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- CLEAR_DELETE
: main.h
- clear_tree()
: clustalw.h, calctree.cpp, calctree.c
- clear_tree_nodes()
: calctree.cpp, calctree.c
- CLUSTAL
: clustalw.h
- clustal_name
: amenu.cpp, amenu.c
- clustal_out()
: interfac.cpp, interfac.c, clustalw.h
- clustal_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- clustal_outname
: interfac.cpp, interfac.c
- clustal_phy_tree_file
: trees.cpp, trees.c
- clustal_tree_name
: interfac.cpp, interfac.c
- clustalvdnamt
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- clustalw_main()
: clustalw.cpp, clustalw.c, Alignment.cpp
- CM_OPEN_FEATURE
: enums.h
- cmd_line_file
: param.h
- cmd_line_para
: param.h
- cmd_line_type
: interfac.cpp, interfac.c
- cmd_line_verb
: param.h
- cmpint()
: main.h, main.cpp
- cmpre()
: main.h, main.cpp
- color
: xmenu.h
- color_prf1()
: xmenu.h
- color_prf2()
: xmenu.h
- color_seqs()
: xmenu.h
- COMMANDSEP
: clustalw.h
- commentline()
: readmat.cpp, readmat.c
- COMPANY_NAME
: GENtle_private.h
- compare_tree()
: trees.cpp, trees.c
- compressSeq()
: ureadseq.h, ureadseq.c
- correct_name_bars()
: xmenu.h
- correct_seq_bars()
: xmenu.h
- count_clustal_seqs()
: sequence.cpp, sequence.c
- count_gaps()
: alnscore.cpp, alnscore.c
- count_msf_seqs()
: sequence.cpp, sequence.c
- count_pir_seqs()
: sequence.cpp, sequence.c
- count_rsf_seqs()
: sequence.cpp, sequence.c
- countid()
: malign.cpp, malign.c, clustalw.h
- countseq()
: ureadseq.c
- CRC32checksum()
: ureadseq.h, ureadseq.c
- crctab
: ureadseq.c
- create_alignment_output()
: interfac.cpp, interfac.c, clustalw.h
- create_node()
: calctree.cpp, calctree.c
- create_parameter_output()
: interfac.cpp, interfac.c
- create_sets()
: clustalw.h, calctree.cpp, calctree.c
- create_tree()
: calctree.cpp, calctree.c
- curr_frag
: showpair.cpp, showpair.c
- DAM_METHYLATION
: main.h
- data_colors()
: xmenu.h
- dayhoff_pams
: dayhoff.h
- DCM_METHYLATION
: main.h
- DCOLS
: xmenu.h
- DD
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- DDR_AS_ITEM
: CloningAssistant.h
- DDR_AS_SEQUENCE
: CloningAssistant.h
- DDR_HIGHLIGHT_AS
: CloningAssistant.h
- DDR_HIGHLIGHT_LEFT
: CloningAssistant.h
- DDR_HIGHLIGHT_NONE
: CloningAssistant.h
- DDR_HIGHLIGHT_RIGHT
: CloningAssistant.h
- DDR_NONE
: CloningAssistant.h
- debug
: sequence.cpp, sequence.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, param.h, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, calctree.cpp, calctree.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c, alnscore.cpp, alnscore.c
- def_aa_xref
: readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, clustalw.cpp, clustalw.c, alnscore.cpp, alnscore.c
- def_dna_xref
: readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, clustalw.cpp, clustalw.c
- del()
: palign.cpp, palign.c
- des_quick_sort()
: showpair.cpp, showpair.c
- deselect_panel()
: xmenu.h
- diag_index
: showpair.cpp, showpair.c
- diff()
: palign.cpp, palign.c
- DIRDELIM
: clustalw.h
- displ
: showpair.cpp, showpair.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c
- dist_name
: amenu.cpp, amenu.c
- dist_tree_name
: interfac.cpp, interfac.c
- distance_matrix_output()
: trees.cpp, trees.c
- distance_tree
: prfalign.cpp, prfalign.c, malign.cpp, malign.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- distances_phy_tree_file
: trees.cpp, trees.c
- divergence_cutoff
: param.h, malign.cpp, malign.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_distance_matrix()
: trees.cpp, trees.c, clustalw.h
- dna_gap_extend
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_gap_open
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_ktup
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_pw_ge_penalty
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_pw_go_penalty
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_signif
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_wind_gap
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_window
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- dna_xref
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- dnaflag
: trees.cpp, trees.c, showpair.cpp, showpair.c, sequence.cpp, sequence.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- dnamatnum
: param.h, amenu.cpp, amenu.c
- dnamatrix_menu
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- DNAMES
: xmenu.h
- dnamtrxname
: prfalign.cpp, prfalign.c, param.h, amenu.cpp, amenu.c
- dnausermtrxname
: param.h
- DNUMBER
: xmenu.h
- do_system()
: util.cpp, util.c, clustalw.h
- draw_allseqs()
: xmenu.h
- draw_colscores()
: xmenu.h
- draw_footer()
: xmenu.h
- draw_header()
: xmenu.h
- draw_nameline()
: xmenu.h
- draw_names()
: xmenu.h
- draw_seq_pointer()
: xmenu.h
- draw_seqcol()
: xmenu.h
- draw_seqline()
: xmenu.h
- draw_seqs()
: xmenu.h
- DrawPanel()
: xmenu.h
- eASNerr
: ureadseq.h
- ED
: enums.h
- ED_CANCEL
: enums.h
- ED_OK
: enums.h
- EE_BT_ICE
: enums.h
- EE_LB_CE
: enums.h
- EE_LB_GE
: enums.h
- EE_LB_GR
: enums.h
- EE_START
: enums.h
- eFileCreate
: ureadseq.h
- eFileNotFound
: ureadseq.h
- EI_BLAST
: ExternalInterface.h
- EI_NCBI
: ExternalInterface.h
- eItemNotFound
: ureadseq.h
- element
: global.h
- EMBLSWISS
: clustalw.h
- eMemFull
: ureadseq.h
- empty
: trees.cpp, trees.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- ENDALN
: prfalign.cpp, prfalign.c
- endEMBL()
: ureadseq.c
- endFitch()
: ureadseq.c
- endgappenalties
: prfalign.cpp, prfalign.c, param.h, calcgap.cpp, calcgap.c
- endGB()
: ureadseq.c
- endIG()
: ureadseq.c
- endNBRF()
: ureadseq.c
- endPearson()
: ureadseq.c
- endPhylipSequential()
: ureadseq.c
- endPIR()
: ureadseq.c
- endStrider()
: ureadseq.c
- endZuker()
: ureadseq.c
- eNoData
: ureadseq.h
- eOneFormat
: ureadseq.h
- eOptionBad
: ureadseq.h
- EOS
: general.h
- error()
: clustalw.h, amenu.cpp, amenu.c
- EST_GLOBAL
: ProgramOptionsDialog.h
- EST_PROJECT
: ProgramOptionsDialog.h
- EST_SINGLE
: ProgramOptionsDialog.h
- eUnequalSize
: ureadseq.h
- eUnknownFormat
: ureadseq.h
- exit_error()
: ncoils.cpp, ncoils.h, ncoils.c, main.h
- explicit_dnaflag
: sequence.cpp, sequence.c, param.h, interfac.cpp, interfac.c
- explode()
: main.h, main.cpp
- ext_penalty1()
: prfalign.cpp, prfalign.c
- ext_penalty2()
: prfalign.cpp, prfalign.c
- false
: ureadseq.h
- FALSE
: general.h
- fast_nj_tree()
: trees.cpp, trees.c
- FASTA
: clustalw.h
- fasta_name
: amenu.cpp, amenu.c
- fasta_out()
: interfac.cpp, interfac.c, clustalw.h
- fasta_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- fasta_outname
: interfac.cpp, interfac.c
- fatal()
: clustalw.h, amenu.cpp, amenu.c
- fd
: calctree.cpp, calctree.c
- FD_ADD_HIGHLIGHTS
: enums.h
- FD_RESET_HIGHLIGHTS
: enums.h
- FD_SET_HIGHLIGHT_COLOR
: enums.h
- FEAT_ALPHA
: main.h
- FEAT_BETA
: main.h
- FEAT_MUT
: main.h
- FEAT_NOLINE
: main.h
- FEAT_NONE
: main.h
- FEAT_VLINE
: main.h
- FILARG
: param.h
- FILE_DESCRIPTION
: GENtle_private.h
- FILE_MENU_EXPORT
: MyFrame.h
- FILE_MENU_PRINT
: MyFrame.h
- FILE_MENU_PRINT_RESTRICTIONS
: MyFrame.h
- FILE_MENU_SAVE
: MyFrame.h
- FILE_VERSION
: GENtle_private.h
- FILENAMELEN
: clustalw.h
- fill_chartab()
: sequence.cpp, sequence.c, clustalw.h, clustalw.cpp, clustalw.c
- fillrange()
: interfac.cpp, interfac.c
- FILLSTRING
: main.h
- fin
: sequence.cpp, sequence.c
- find_file()
: xmenu.h
- find_match()
: interfac.cpp, interfac.c
- FIND_MAX
: FindSequenceDialog.cpp
- first_seq
: trees.cpp, trees.c
- firstres
: amenu.cpp, amenu.c
- fix_gaps()
: interfac.cpp, interfac.c, clustalw.h
- fixmatchchar
: ureadseq.c
- floatArray
: TGraph.h
- FLTARG
: param.h
- format_options_menu()
: amenu.cpp, amenu.c
- formatNames
: sequence.cpp, sequence.c
- forward_pass()
: palign.cpp, palign.c
- frag_rel_pos()
: showpair.cpp, showpair.c
- FRAME_SASH_1
: enums.h
- FRAME_SASH_2
: enums.h
- FRAME_SASH_BOTTOM
: enums.h
- FRAME_SASH_TOP
: enums.h
- free_aln()
: util.cpp, util.c, clustalw.h
- free_seq()
: util.cpp, util.c, clustalw.h
- g
: palign.cpp, palign.c
- gap
: palign.cpp, palign.c
- gap_dist
: param.h, interfac.cpp, interfac.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- gap_extend
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- gap_open
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c, alnscore.cpp, alnscore.c
- gap_penalties_menu()
: amenu.cpp, amenu.c
- gap_penalty1()
: prfalign.cpp, prfalign.c
- gap_penalty2()
: prfalign.cpp, prfalign.c
- gap_penalty_mask
: sequence.cpp, sequence.c, interfac.cpp, interfac.c
- gap_penalty_mask1
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- gap_penalty_mask2
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- gap_pos1
: trees.cpp, trees.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calcprf2.cpp, calcprf2.c, calcprf1.cpp, calcprf1.c
- gap_pos2
: trees.cpp, trees.c, sequence.cpp, sequence.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calcprf2.cpp, calcprf2.c, calcprf1.cpp, calcprf1.c
- gapcoef1
: prfalign.cpp, prfalign.c
- gapcoef2
: prfalign.cpp, prfalign.c
- GAPCOL
: clustalw.h
- gaps
: prfalign.cpp, prfalign.c
- gb_item_type
: GenBank.cpp
- GCG_LINELENGTH
: clustalw.h
- gcg_out()
: interfac.cpp, interfac.c, clustalw.h
- gcg_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- gcg_outname
: interfac.cpp, interfac.c
- GCGchecksum()
: ureadseq.h, ureadseq.c
- GDE
: clustalw.h
- gde_out()
: interfac.cpp, interfac.c, clustalw.h
- gde_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- gde_outname
: interfac.cpp, interfac.c
- gdist
: calcgap.cpp, calcgap.c
- GENTLE_DRAG_DATA
: ManageDatabase.h
- GENTLE_VERSION_MAJOR
: main.h
- GENTLE_VERSION_MINOR
: main.h
- GENTLE_VERSION_SUB
: main.h
- GES_COL_1
: enums.h
- GES_COL_2
: enums.h
- GES_COL_3
: enums.h
- GES_USE
: enums.h
- GES_USE_COLOR_CODING
: enums.h
- GES_USE_MAXCUTOFF
: enums.h
- GES_USE_MINCUTOFF
: enums.h
- get_clustal_seq()
: sequence.cpp, sequence.c
- get_clustal_ss()
: sequence.cpp, sequence.c
- get_embl_ss()
: sequence.cpp, sequence.c
- get_gde_ss()
: sequence.cpp, sequence.c
- get_help()
: interfac.cpp, interfac.c, clustalw.h
- get_matrix()
: readmat.cpp, readmat.c, clustalw.h
- get_msf_seq()
: sequence.cpp, sequence.c
- get_path()
: util.cpp, util.c, clustalw.h
- get_rsf_feature()
: sequence.cpp, sequence.c
- get_rsf_ss()
: sequence.cpp, sequence.c
- get_seq()
: sequence.cpp, sequence.c
- get_swiss_feature()
: sequence.cpp, sequence.c
- get_swiss_mask()
: sequence.cpp, sequence.c
- get_tree()
: interfac.cpp, interfac.c, clustalw.h
- get_user_matrixname()
: xmenu.h
- getargs()
: readmat.cpp, readmat.c, clustalw.h
- getint()
: util.cpp, util.c, clustalw.h
- getline()
: ureadseq.c
- getreal()
: util.cpp, util.c, clustalw.h
- getseqtype()
: ureadseq.h, ureadseq.c
- getstr()
: util.cpp, util.c, clustalw.h
- gFail
: xmltest.cpp
- gh
: palign.cpp, palign.c
- global_sort_ascending
: TRestrictionEditor.cpp
- global_sort_mode
: TRestrictionEditor.cpp
- GMASK
: clustalw.h
- gon120mt
: prfalign.cpp, prfalign.c, matrices.h
- gon160mt
: prfalign.cpp, prfalign.c, matrices.h
- gon250mt
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- gon300mt
: matrices.h
- gon350mt
: prfalign.cpp, prfalign.c, matrices.h
- gon40mt
: prfalign.cpp, prfalign.c, matrices.h
- gon80mt
: prfalign.cpp, prfalign.c, matrices.h
- gPass
: xmltest.cpp
- gPretty
: ureadseq.h
- gPrettyInit
: ureadseq.h
- GRAPH_COPY_AS_IMAGE
: enums.h
- GRAPH_DRAW_ALL
: TGraph.h
- GRAPH_DRAW_MAP
: TGraph.h
- GRAPH_DRAW_MINI
: TGraph.h
- GRAPH_DRAW_SCALES
: TGraph.h
- GRAPH_SAVE_AS_IMAGE
: enums.h
- GRAPH_SWAP_SIDE
: enums.h
- GRAPH_ZOOM_LINKED
: enums.h
- GRAPH_ZOOM_X
: enums.h
- GRAPH_ZOOM_Y
: enums.h
- group_seqs()
: calctree.cpp, calctree.c
- groups
: calctree.cpp, calctree.c
- gS
: prfalign.cpp, prfalign.c
- guide_tree()
: trees.cpp, trees.c, clustalw.h
- helix_end_minus
: param.h, amenu.cpp, amenu.c
- helix_end_penalty
: param.h, amenu.cpp, amenu.c
- helix_end_plus
: param.h, amenu.cpp, amenu.c
- helix_penalty
: param.h, amenu.cpp, amenu.c
- help_file_name
: clustalw.cpp, clustalw.c
- HH
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- HIGHLIGHT
: xmenu.h
- highlight_seqrange()
: xmenu.h
- HTML_PRINT
: TCalculator.h
- HTML_PRINT_PREVIEW
: TCalculator.h
- hyd_residues
: param.h, interfac.cpp, interfac.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- ID_B1
: ExternalInterface.h
- ID_B2
: ExternalInterface.h
- ID_B3
: ExternalInterface.h
- ID_B_LAST
: ExternalInterface.h
- ID_B_NEXT
: ExternalInterface.h
- ID_C1
: ExternalInterface.h
- ID_C2
: ExternalInterface.h
- ID_HLB
: ExternalInterface.h
- ID_T1
: ExternalInterface.h
- ID_T2
: ExternalInterface.h
- ID_T3
: ExternalInterface.h
- ID_T4
: ExternalInterface.h
- idmat
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- IED_CANCEL
: enums.h
- IED_COLOR
: enums.h
- IED_LIST
: enums.h
- IED_OK
: enums.h
- IED_USEOFFSET
: enums.h
- IMGTYPE_MISC
: TIMGreader.h
- IMGTYPE_TEXT
: TIMGreader.h
- implode()
: main.h, main.cpp
- info()
: clustalw.h, amenu.cpp, amenu.c
- init_amenu()
: clustalw.h, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- init_color_parameters()
: xmenu.h
- init_interface()
: interfac.cpp, interfac.c, clustalw.h, clustalw.cpp, clustalw.c
- init_matrix()
: readmat.cpp, readmat.c, clustalw.h, clustalw.cpp, clustalw.c
- INPUT
: clustalw.h
- insert_node()
: calctree.cpp, calctree.c
- insert_root()
: calctree.cpp, calctree.c
- int_scale
: palign.cpp, palign.c
- INT_SCALE_FACTOR
: clustalw.h
- INTARG
: param.h
- interactive
: sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- INTERNAL_NAME
: GENtle_private.h
- ipc_compound
: global.h
- IPC_VERSION
: global.h
- is_ambiguity()
: trees.cpp, trees.c
- is_lower
: ureadseq.h
- IS_UNDO_OFF
: TUndo.cpp
- is_upper
: ureadseq.h
- isAnyChar()
: ureadseq.c
- isend
: interfac.cpp, interfac.c
- isgap
: interfac.cpp, interfac.c
- isotope
: global.h
- isSeqChar()
: ureadseq.c
- isSeqNumChar()
: ureadseq.c
- IUPAC_A
: main.h
- IUPAC_C
: main.h
- IUPAC_G
: main.h
- IUPAC_T
: main.h
- IV_BUTTON
: enums.h
- IV_CB
: enums.h
- IV_CB_INVERT
: enums.h
- IV_IMAGE
: enums.h
- IV_LIST
: enums.h
- IV_MENU_COPY
: enums.h
- IV_MENU_PRINT
: enums.h
- IV_MENU_SAVE_AS_BITMAP
: enums.h
- kAmino
: ureadseq.h
- kASN1
: ureadseq.h
- kASNseqentry
: ureadseq.h
- kASNseqset
: ureadseq.h
- kDNA
: ureadseq.h
- kEMBL
: ureadseq.h
- keyword()
: util.cpp, util.c, clustalw.h
- kFitch
: ureadseq.h
- kGCG
: ureadseq.h
- kGenBank
: ureadseq.h
- kIG
: ureadseq.h
- kimura
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- kListSequences
: ureadseq.h
- kMaxFormat
: ureadseq.h
- kMaxseqwidth
: ureadseq.c
- kMinFormat
: ureadseq.h
- kMSF
: ureadseq.h
- kNBRF
: ureadseq.h
- kNocountsymbols
: ureadseq.c
- kNoformat
: ureadseq.h
- kNucleic
: ureadseq.h
- kOlsen
: ureadseq.h
- kOtherSeq
: ureadseq.h
- kPAUP
: ureadseq.h
- kPearson
: ureadseq.h
- kPhylip
: ureadseq.h
- kPhylip2
: ureadseq.h
- kPhylip3
: ureadseq.h
- kPhylip4
: ureadseq.h
- kPhylipInterleave
: ureadseq.h
- kPhylipSequential
: ureadseq.h
- kPIR
: ureadseq.h
- kPlain
: ureadseq.h
- kPretty
: ureadseq.h
- kRNA
: ureadseq.h
- kStartLength
: ureadseq.c
- kStrider
: ureadseq.h
- ktup
: showpair.cpp, showpair.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- kUnknown
: ureadseq.h
- kZuker
: ureadseq.h
- LANDSCAPE
: xmenu.h
- last_print
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- last_seq
: trees.cpp, trees.c
- lastres
: amenu.cpp, amenu.c
- LD_CANCEL
: enums.h
- LD_OK
: enums.h
- LD_SOURCES
: enums.h
- LD_TARGETS
: enums.h
- LEAF
: clustalw.h
- LEFT
: clustalw.h
- left_branch
: trees.cpp, trees.c
- LEGAL_COPYRIGHT
: GENtle_private.h
- LEGAL_TRADEMARKS
: GENtle_private.h
- lencoef1
: prfalign.cpp, prfalign.c
- lencoef2
: prfalign.cpp, prfalign.c
- LENCOL
: clustalw.h
- lin1
: amenu.cpp, amenu.c
- lin2
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- lin3
: amenu.cpp, amenu.c
- LINELENGTH
: clustalw.h
- linetype()
: util.cpp, util.c, clustalw.h
- linrand()
: random.cpp, random.c, clustalw.h
- lint
: general.h
- listSeqs()
: ureadseq.h, ureadseq.c
- load_aln()
: xmenu.h
- load_aln_data()
: xmenu.h
- Local
: ureadseq.c
- local_penalty()
: calcgap.cpp, calcgap.c
- LOCAL_STORAGE
: TStorage.h
- loop_penalty
: param.h, amenu.cpp, amenu.c
- LOW_LIMIT
: TVirtualGel.cpp
- lowercase
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- lowstr()
: util.cpp, util.c, clustalw.h
- lptr
: calctree.cpp, calctree.c
- m
: random.cpp, random.c
- m1
: random.cpp, random.c
- M_SILMUT
: TSilmutDialog.h
- M_WHATCUTS
: TSilmutDialog.h
- main()
: xmltest.cpp, clustalw.h
- main_menu()
: clustalw.h, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- MAIN_TREE_DUMMY
: enums.h
- make_colormask()
: xmenu.h
- make_colscores()
: xmenu.h
- make_consensus()
: xmenu.h
- make_gp_data()
: xmenu.h
- make_n_ptrs()
: showpair.cpp, showpair.c
- make_p_ptrs()
: showpair.cpp, showpair.c
- make_ruler()
: xmenu.h
- make_scroll_area()
: xmenu.h
- make_struct_data()
: xmenu.h
- make_tree()
: interfac.cpp, interfac.c, clustalw.h
- malign()
: malign.cpp, malign.c, clustalw.h
- MARGIN
: xmenu.h
- mark_group1()
: calctree.cpp, calctree.c
- mark_group2()
: calctree.cpp, calctree.c
- mat_avscore
: readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, clustalw.cpp, clustalw.c
- matnum
: param.h, amenu.cpp, amenu.c
- matrix
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- matrix_menu
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- matseries
: readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, clustalw.cpp, clustalw.c
- max
: ureadseq.h
- MAX
: TVector.cpp, prfalign.cpp, prfalign.c, palign.cpp, palign.c, alnscore.cpp, alnscore.c
- max_aa
: showpair.cpp, showpair.c, readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calcprf2.cpp, calcprf2.c, calcprf1.cpp, calcprf1.c, calcgap.cpp, calcgap.c, alnscore.cpp, alnscore.c
- max_aln_length
: trees.cpp, trees.c, showpair.cpp, showpair.c, sequence.cpp, sequence.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- MAX_LIGATIONS
: TLigationDialog.cpp
- MAX_LINE
: element.h
- max_names
: trees.cpp, trees.c, sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- MAXARGS
: param.h
- MAXCOLORS
: xmenu.h
- MAXCUTS_PER_1K
: TVector.cpp
- MAXERRS
: calctree.cpp, calctree.c
- MAXFINDSTR
: xmenu.h
- MAXHELPLENGTH
: xmenu.h
- MAXHELPW
: xmenu.h
- MAXLINE
: general.h
- MAXMAT
: clustalw.h
- MAXMENU
: xmenu.h
- MAXNAMES
: clustalw.h
- MAXPROMPTLEN
: xmenu.h
- maxscore
: palign.cpp, palign.c
- maxsf
: showpair.cpp, showpair.c
- MAXTITLES
: clustalw.h
- MCD_OK
: enums.h
- MD_PD_ADD
: enums.h
- MD_PD_ADD_MYSQL
: enums.h
- MD_PD_DBLIST
: enums.h
- MD_PD_DEFAULT
: enums.h
- MD_PD_DEL
: enums.h
- MD_PM_DD_L
: enums.h
- MD_PM_DD_R
: enums.h
- MD_PM_DEL
: enums.h
- MD_PM_EDIT
: enums.h
- MD_PM_FILTER
: enums.h
- MD_PM_FILTER_ALIGN
: enums.h
- MD_PM_FILTER_DESC
: enums.h
- MD_PM_FILTER_DNA
: enums.h
- MD_PM_FILTER_PRIMER
: enums.h
- MD_PM_FILTER_PROTEIN
: enums.h
- MD_PM_FILTER_SEQ
: enums.h
- MD_PM_LEFT
: enums.h
- MD_PM_NEW
: enums.h
- MD_PM_NEW_MYSQL
: enums.h
- MD_PM_OPEN
: enums.h
- MD_PM_REN
: enums.h
- MD_PM_RIGHT
: enums.h
- MD_PM_SAVE
: enums.h
- MD_PM_SAVE_DB
: enums.h
- MD_PM_TWOPANES
: enums.h
- MDI_AA_IPC
: enums.h
- MDI_ABOUT
: enums.h
- MDI_ALIGNMENT
: enums.h
- MDI_AS_NEW_FEATURE
: enums.h
- MDI_AUTO_ANNOTATE
: enums.h
- MDI_CALCULATOR
: enums.h
- MDI_CHANGE_POSITION
: enums.h
- MDI_CHANGE_SIZE
: enums.h
- MDI_CHANGE_TITLE
: enums.h
- MDI_CHILD_QUIT
: enums.h
- MDI_CIRCULAR_LINEAR
: enums.h
- MDI_CLONING_ASSISTANT
: enums.h
- MDI_CLOSE
: enums.h
- MDI_COPY
: enums.h
- MDI_COPY_TO_NEW
: enums.h
- MDI_CUT
: enums.h
- MDI_DUMMY_END
: enums.h
- MDI_DUMMY_START
: enums.h
- MDI_EDIT_MODE
: enums.h
- MDI_EDIT_ORFS
: enums.h
- MDI_ENZYME_EDITOR
: enums.h
- MDI_EXPORT
: enums.h
- MDI_EXTERNAL_INTERFACE
: enums.h
- MDI_EXTRACT_AA
: enums.h
- MDI_FILE_IMPORT
: enums.h
- MDI_FILE_OPEN
: enums.h
- MDI_FILE_SAVE
: enums.h
- MDI_FILL_KLENOW
: enums.h
- MDI_FIND
: enums.h
- MDI_GRAPH
: enums.h
- MDI_HELP
: enums.h
- MDI_HOMEPAGE
: enums.h
- MDI_IMAGE_VIEWER
: enums.h
- MDI_LIGATION
: enums.h
- MDI_MANAGE_DATABASE
: enums.h
- MDI_MARK_ALL
: enums.h
- MDI_NEXT_WINDOW
: enums.h
- MDI_ORFS
: enums.h
- MDI_PASTE
: enums.h
- MDI_PREV_WINDOW
: enums.h
- MDI_PRINT_IMAGE
: enums.h
- MDI_PRINT_REPORT
: enums.h
- MDI_PRINT_RESTRICTION_LIST
: enums.h
- MDI_PROJECT_CLOSE
: enums.h
- MDI_PROJECT_LOAD
: enums.h
- MDI_PROJECT_SAVE
: enums.h
- MDI_QUIT
: enums.h
- MDI_REDO
: enums.h
- MDI_REFRESH
: enums.h
- MDI_REMOVE_SEQUENCING_PRIMERS
: enums.h
- MDI_RESTRICTION
: enums.h
- MDI_RUN_PCR
: enums.h
- MDI_SEL_AS_NEW_PRIMER
: enums.h
- MDI_SEQUENCING_ASSISTANT
: enums.h
- MDI_SEQUENCING_PRIMER
: enums.h
- MDI_SIRNA
: enums.h
- MDI_SPEAK
: enums.h
- MDI_TEXT_IMPORT
: enums.h
- MDI_TOGGLE_FEATURES
: enums.h
- MDI_TOGGLE_IDNA
: enums.h
- MDI_TOGGLE_RESTRICTION
: enums.h
- MDI_TRANSFORM_SEQUENCE
: enums.h
- MDI_UNDO
: enums.h
- MDI_VIEW_MODE
: enums.h
- menu_item
: xmenu.h
- MESSLENGTH
: xmenu.h
- MESSLINES
: xmenu.h
- MIN
: TVector.cpp, sequence.cpp, sequence.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, alnscore.cpp, alnscore.c
- min
: ureadseq.h
- MINI_DISPLAY_CONDENSED
: main.h
- MINI_DISPLAY_ORIGINAL
: main.h
- MINI_DISPLAY_REAL
: main.h
- mm_score
: palign.cpp, palign.c
- MODE_CIRCULAR
: PlasmidCanvas.h
- MODE_LINEAR
: PlasmidCanvas.h
- MSDOS
: clustalw.h
- MSF
: clustalw.h
- MT_CLOSE
: enums.h
- mtrxname
: prfalign.cpp, prfalign.c, param.h, amenu.cpp, amenu.c
- mult()
: random.cpp, random.c
- multi_menu()
: amenu.cpp, amenu.c
- multiple_align_menu()
: amenu.cpp, amenu.c
- MULTIPLEM
: xmenu.h
- myapp()
: main.h, main.cpp
- myass
: main.h
- MYBRUSH
: main.h
- MyChildBase
: ChildBase.h
- MYFONT
: main.h
- MYFONTSIZE
: main.h
- MyFrameType
: MyFrame.h, ChildBase.h
- MYLISTBORDER
: main.h
- mylog
: main.h
- MYPEN
: main.h
- MYSPINBOXSIZE
: main.h
- n_encode()
: sequence.cpp, sequence.c
- nameonly()
: interfac.cpp, interfac.c
- names
: util.cpp, util.c, trees.cpp, trees.c, sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- NAMES
: xmenu.h
- nbrf_out()
: interfac.cpp, interfac.c, clustalw.h
- nbrf_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- nbrf_outname
: interfac.cpp, interfac.c
- ncoils_function()
: ncoils.h, ncoils.cpp, ncoils.h, ncoils.c
- ncoils_main()
: ncoils.cpp, ncoils.c
- neg_matrix
: prfalign.cpp, prfalign.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- NEW
: xmenu.h
- new_seq
: param.h, interfac.cpp, interfac.c
- new_sequence_align()
: interfac.cpp, interfac.c, clustalw.h
- new_tree1_file
: interfac.cpp, interfac.c
- new_tree2_file
: interfac.cpp, interfac.c
- new_tree_file
: interfac.cpp, interfac.c
- NEWLINE
: ureadseq.h
- next
: showpair.cpp, showpair.c
- NEXUS
: clustalw.h
- nexus_name
: amenu.cpp, amenu.c
- nexus_out()
: interfac.cpp, interfac.c, clustalw.h
- nexus_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- nexus_outname
: interfac.cpp, interfac.c
- nexus_phy_tree_file
: trees.cpp, trees.c
- nexus_tree_name
: interfac.cpp, interfac.c
- nhyd_pen
: calcgap.cpp, calcgap.c
- nj_tree()
: trees.cpp, trees.c
- nnodes
: calctree.cpp, calctree.c
- no_hyd_penalties
: param.h, interfac.cpp, interfac.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- no_pref_penalties
: param.h, interfac.cpp, interfac.c, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- no_var_penalties
: param.h, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- no_weights
: param.h, malign.cpp, malign.c, interfac.cpp, interfac.c, calctree.cpp, calctree.c
- NOARG
: param.h
- NODE
: clustalw.h
- NONE
: clustalw.h
- nonummask
: ureadseq.c
- NORMAL
: xmenu.h
- npref_pen
: calcgap.cpp, calcgap.c
- nptr
: calctree.cpp, calctree.c
- nseqs
: trees.cpp, trees.c, showpair.cpp, showpair.c, sequence.cpp, sequence.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c, alnscore.cpp, alnscore.c
- nseqs1
: prfalign.cpp, prfalign.c
- nseqs2
: prfalign.cpp, prfalign.c
- nsets
: malign.cpp, malign.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- ntotal
: calctree.cpp, calctree.c
- nucleic_acid_order
: matrices.h
- nummask
: ureadseq.c
- numparams
: interfac.cpp, interfac.c
- NUMRES
: clustalw.h
- numseq
: calctree.cpp, calctree.c
- nvar_pen
: calcgap.cpp, calcgap.c
- OLD
: xmenu.h
- olptr
: calctree.cpp, calctree.c
- ONLINE_TOOLS_2ZIP
: enums.h
- ONLINE_TOOLS_BEGIN
: enums.h
- ONLINE_TOOLS_CALCPI
: enums.h
- ONLINE_TOOLS_DGPI
: enums.h
- ONLINE_TOOLS_ELM
: enums.h
- ONLINE_TOOLS_END
: enums.h
- ONLINE_TOOLS_GOR
: enums.h
- ONLINE_TOOLS_HNN
: enums.h
- ONLINE_TOOLS_JPRED
: enums.h
- ONLINE_TOOLS_MITOPROT
: enums.h
- ONLINE_TOOLS_MOTIF_SCAN
: enums.h
- ONLINE_TOOLS_MULTALIN
: enums.h
- ONLINE_TOOLS_MYRISTOYLATOR
: enums.h
- ONLINE_TOOLS_NEB_CUTTER
: enums.h
- ONLINE_TOOLS_NOMAD
: enums.h
- ONLINE_TOOLS_PHOBIUS
: enums.h
- ONLINE_TOOLS_PLASMAPPER
: enums.h
- ONLINE_TOOLS_POLY_PHOBIUS
: enums.h
- ONLINE_TOOLS_PREPS
: enums.h
- ONLINE_TOOLS_PVAL_FPSCAN
: enums.h
- ONLINE_TOOLS_SAPS
: enums.h
- ONLINE_TOOLS_SULFINATOR
: enums.h
- ONLINE_TOOLS_SUMOPLOT
: enums.h
- ONLINE_TOOLS_TARGETP
: enums.h
- ONLINE_TOOLS_TRANSLATE
: enums.h
- ONLINE_TOOLS_WEBLOGO
: enums.h
- open_alignment_output()
: interfac.cpp, interfac.c, clustalw.h
- open_explicit_file()
: interfac.cpp, interfac.c, clustalw.h
- open_input_file()
: xmenu.h
- open_output_file()
: interfac.cpp, interfac.c, clustalw.h
- open_penalty1()
: prfalign.cpp, prfalign.c
- open_penalty2()
: prfalign.cpp, prfalign.c
- operator<()
: TRestrictionEditor.h, TRestrictionEditor.cpp, TProteolysis.h, TProteolysis.cpp, TPrimerDialog.cpp, RestrictionEnzymes.h, RestrictionEnzymes.cpp, MyChild.cpp
- operator<<()
: tinyxml.cpp
- operator==()
: TRestrictionEditor.h, TRestrictionEditor.cpp, TProteolysis.h, TProteolysis.cpp, TPrimerDialog.cpp, RestrictionEnzymes.h, RestrictionEnzymes.cpp, MyChild.cpp
- OPTARG
: param.h
- order_nodes()
: calctree.cpp, calctree.c
- ORF_AS_NEW_AA
: enums.h
- ORF_AS_NEW_DNA
: enums.h
- ORF_AS_NEW_ITEM
: enums.h
- ORF_BLAST_AA
: enums.h
- ORF_BLAST_DNA
: enums.h
- ORF_COPY_AA
: enums.h
- ORF_COPY_DNA
: enums.h
- ORIGINAL_FILENAME
: GENtle_private.h
- outfile_name
: interfac.cpp, interfac.c
- outorder_arg
: param.h
- output_arg
: param.h
- output_clustal
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_fasta
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_gcg
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_gde
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_index
: util.cpp, util.c, sequence.cpp, sequence.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- output_nbrf
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_nexus
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_order
: param.h, malign.cpp, malign.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_phylip
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_pim
: trees.cpp, trees.c, param.h
- output_struct_penalties
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_tree_clustal
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_tree_distances
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_tree_nexus
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- output_tree_phylip
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- outputsecstr_arg
: param.h
- outputtree_arg
: param.h
- overspill_message()
: trees.cpp, trees.c
- p1_tree_name
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- p2_tree_name
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- p_encode()
: sequence.cpp, sequence.c
- padd()
: prfalign.cpp, prfalign.c
- PAGE_LEN
: clustalw.h
- PAGEWIDTH
: clustalw.h
- pair_align()
: showpair.cpp, showpair.c
- pair_menu()
: amenu.cpp, amenu.c
- pairalign()
: palign.cpp, palign.c, clustalw.h
- pal_op
: calcgap.cpp, calcgap.c
- palign()
: prfalign.cpp, prfalign.c
- palign1()
: malign.cpp, malign.c, clustalw.h
- palign2()
: malign.cpp, malign.c, clustalw.h
- pam120mt
: prfalign.cpp, prfalign.c, matrices.h
- pam160mt
: prfalign.cpp, prfalign.c
- pam20mt
: prfalign.cpp, prfalign.c, matrices.h
- pam350mt
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- pam60mt
: prfalign.cpp, prfalign.c, matrices.h
- panel_data
: xmenu.h
- param_arg
: interfac.cpp, interfac.c
- params
: interfac.cpp, interfac.c
- parse_params()
: interfac.cpp, interfac.c, clustalw.h, clustalw.cpp, clustalw.c
- pas_op
: calcgap.cpp, calcgap.c
- pas_op2
: calcgap.cpp, calcgap.c
- PC_BLAST_AA
: enums.h
- PC_BLAST_DNA
: enums.h
- PC_COPY_IMAGE
: enums.h
- PC_DUMMY
: enums.h
- PC_ITEM_AS_NEW_AA_SEQUENCE
: enums.h
- PC_ITEM_AS_NEW_SEQUENCE
: enums.h
- PC_ITEM_BLAST_AA
: enums.h
- PC_ITEM_BLAST_DNA
: enums.h
- PC_ITEM_COPY_AA
: enums.h
- PC_ITEM_COPY_DNA
: enums.h
- PC_ITEM_DELETE
: enums.h
- PC_ITEM_EDIT
: enums.h
- PC_ITEM_HIDE
: enums.h
- PC_ITEM_MARK
: enums.h
- PC_ITEM_MARK_SHOW
: enums.h
- PC_ITEM_SHOW
: enums.h
- PC_RS_ADD2COCKTAIL
: enums.h
- PC_RS_ADD_AND_CUT
: enums.h
- PC_RS_CUT_WITH_COCKTAIL
: enums.h
- PC_RS_DEL
: enums.h
- PC_RS_EDIT
: enums.h
- PC_RS_HIDE_LIMIT
: enums.h
- PC_RS_INFO
: enums.h
- PC_RS_MARK
: enums.h
- PC_RS_MARK_SHOW
: enums.h
- PC_RS_SHOW_HIDE
: enums.h
- PC_SAVE_IMAGE
: enums.h
- PC_TURNING_POINT
: enums.h
- PC_VECTOR_EDIT
: enums.h
- PC_WHAT_CUTS
: enums.h
- PC_ZOOM
: enums.h
- PCR_SPIN
: enums.h
- PCR_TROUBLESHOOT_LIST
: enums.h
- PD_CANCEL
: enums.h
- PD_DEL
: enums.h
- PD_DIAG_3L
: enums.h
- PD_DIAG_3R
: enums.h
- PD_DIAG_5L
: enums.h
- PD_DIAG_5R
: enums.h
- PD_DIAG_LC
: enums.h
- PD_DIAG_MAXDEG
: enums.h
- PD_DIAG_MAXLEN
: enums.h
- PD_DIAG_MINDEG
: enums.h
- PD_DIAG_MINLEN
: enums.h
- PD_EDIT
: enums.h
- PD_EXPORT
: enums.h
- PD_IMPORT
: enums.h
- PD_LC
: enums.h
- PD_OK
: enums.h
- PD_RESET
: enums.h
- PD_SEARCH
: enums.h
- PD_SILMUT
: enums.h
- PD_SILMUT_ACR
: enums.h
- PD_SILMUT_CANCEL
: enums.h
- PD_SILMUT_EGR
: enums.h
- PD_SILMUT_LB
: enums.h
- PD_SILMUT_MAX_CUT
: enums.h
- PD_SILMUT_MAX_XHG
: enums.h
- PD_SILMUT_OK
: enums.h
- PD_TROUBLESHOOT
: enums.h
- pdel()
: prfalign.cpp, prfalign.c
- pdiff()
: prfalign.cpp, prfalign.c
- PEARSON
: clustalw.h
- percent
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- percentid()
: calcgap.cpp, calcgap.c
- PHYLIP
: clustalw.h
- PHYLIP_CMD_CLIQUE
: enums.h
- PHYLIP_CMD_CONSENSE
: enums.h
- PHYLIP_CMD_CONTML
: enums.h
- PHYLIP_CMD_CONTRAST
: enums.h
- PHYLIP_CMD_DNACOMP
: enums.h
- PHYLIP_CMD_DNADIST
: enums.h
- PHYLIP_CMD_DNAINVAR
: enums.h
- PHYLIP_CMD_DNAML
: enums.h
- PHYLIP_CMD_DNAMLK
: enums.h
- PHYLIP_CMD_DNAMOVE
: enums.h
- PHYLIP_CMD_DNAPARS
: enums.h
- PHYLIP_CMD_DNAPENNY
: enums.h
- PHYLIP_CMD_DOLLOP
: enums.h
- PHYLIP_CMD_DOLMOVE
: enums.h
- PHYLIP_CMD_DOLPENNY
: enums.h
- PHYLIP_CMD_DRAWGRAM
: enums.h
- PHYLIP_CMD_DRAWTREE
: enums.h
- PHYLIP_CMD_FACTOR
: enums.h
- PHYLIP_CMD_FITCH
: enums.h
- PHYLIP_CMD_GENDIST
: enums.h
- PHYLIP_CMD_KITSCH
: enums.h
- PHYLIP_CMD_MIX
: enums.h
- PHYLIP_CMD_MOVE
: enums.h
- PHYLIP_CMD_NEIGHBOR
: enums.h
- PHYLIP_CMD_PARS
: enums.h
- PHYLIP_CMD_PENNY
: enums.h
- PHYLIP_CMD_PROML
: enums.h
- PHYLIP_CMD_PROMLK
: enums.h
- PHYLIP_CMD_PROTDIST
: enums.h
- PHYLIP_CMD_PROTPARS
: enums.h
- PHYLIP_CMD_RESTDIST
: enums.h
- PHYLIP_CMD_RESTML
: enums.h
- PHYLIP_CMD_RETREE
: enums.h
- PHYLIP_CMD_SEQBOOT
: enums.h
- PHYLIP_CMD_SETUP
: enums.h
- PHYLIP_CMD_TREEDIST
: enums.h
- PHYLIP_DIRECT_LINES
: enums.h
- phylip_name
: amenu.cpp, amenu.c
- phylip_out()
: interfac.cpp, interfac.c, clustalw.h
- phylip_outfile
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- phylip_outname
: interfac.cpp, interfac.c
- phylip_phy_tree_file
: trees.cpp, trees.c
- PHYLIP_TREE_LIST
: enums.h
- phylip_tree_name
: interfac.cpp, interfac.c
- PHYLOBOX
: enums.h
- phylogenetic_tree()
: trees.cpp, trees.c, clustalw.h
- phylogenetic_tree_menu()
: amenu.cpp, amenu.c
- PI
: ncoils.cpp, main.h, ncoils.h, main.h
- pim_file
: trees.cpp, trees.c
- pim_name
: interfac.cpp, interfac.c
- pint
: general.h
- PIR
: clustalw.h
- PM_LEFT
: ManageDatabase.cpp
- PM_RIGHT
: ManageDatabase.cpp
- POD_AA_COL
: enums.h
- POD_CANCEL
: enums.h
- POD_OK
: enums.h
- POPUP_DUMMY
: enums.h
- PORTRAIT
: xmenu.h
- position_scrollbars()
: xmenu.h
- POWER
: MiscDialogs.cpp
- pr
: calcgap.cpp, calcgap.c
- pred_coils()
: ncoils.cpp, ncoils.h, ncoils.c, main.h
- PREFIX
: global.h
- prf_length1
: prfalign.cpp, prfalign.c
- prf_length2
: prfalign.cpp, prfalign.c
- prfalign()
: prfalign.cpp, prfalign.c, clustalw.h
- prfscore()
: prfalign.cpp, prfalign.c
- primenuc
: ureadseq.c
- PRIMER_BACKWARD
: enums.h
- PRIMER_BOTH
: enums.h
- PRIMER_FORWARD
: enums.h
- PRIMER_MUTATION
: enums.h
- print_nexus_tree()
: trees.cpp, trees.c
- print_phylip_tree()
: trees.cpp, trees.c
- print_ptr
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- print_sec_struct_mask()
: interfac.cpp, interfac.c, clustalw.h
- print_tree()
: trees.cpp, trees.c
- PRO_CUTS
: enums.h
- PRO_FRAGMENTS_ALL
: enums.h
- PRO_FRAGMENTS_NONE
: enums.h
- PRO_IGNORE
: enums.h
- PRO_PROTEASES
: enums.h
- PRO_SEP_FRAGMENTS
: enums.h
- PRO_SEP_NUM_PROT
: enums.h
- PRO_SEP_RES
: enums.h
- PRO_SHOW_UNCUT
: enums.h
- PRO_SORT_RESULTS
: enums.h
- PRODUCT_NAME
: GENtle_private.h
- PRODUCT_VERSION
: GENtle_private.h
- PROFILE
: clustalw.h
- profile1
: prfalign.cpp, prfalign.c
- profile1_empty
: sequence.cpp, sequence.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- profile1_name
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- profile1_nseqs
: malign.cpp, malign.c, interfac.cpp, interfac.c
- profile2
: prfalign.cpp, prfalign.c
- profile2_empty
: sequence.cpp, sequence.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- profile2_name
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- profile_align()
: interfac.cpp, interfac.c, clustalw.h
- profile_align_menu()
: amenu.cpp, amenu.c
- profile_input()
: interfac.cpp, interfac.c, clustalw.h
- profile_no
: sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- profile_type
: param.h
- PROFILEM
: xmenu.h
- PROGRAM_OPTIONS
: enums.h
- prompt_for_yes_no()
: clustalw.h, amenu.cpp, amenu.c
- prot_distance_matrix()
: trees.cpp, trees.c, clustalw.h
- prot_gap_extend
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_gap_open
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_ktup
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_pw_ge_penalty
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_pw_go_penalty
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_signif
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_wind_gap
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- prot_window
: showpair.cpp, showpair.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- protonly
: ureadseq.c
- ptracepath()
: prfalign.cpp, prfalign.c
- ptrs
: calctree.cpp, calctree.c
- put_frag()
: showpair.cpp, showpair.c
- pw_aa_xref
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_dna_xref
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_dnamatnum
: param.h, amenu.cpp, amenu.c
- pw_dnamtrxname
: param.h, palign.cpp, palign.c, amenu.cpp, amenu.c
- pw_dnausermtrxname
: param.h
- pw_ge_penalty
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_go_penalty
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_matnum
: param.h, amenu.cpp, amenu.c
- pw_matrix_menu
: interfac.cpp, interfac.c, amenu.cpp, amenu.c
- pw_mtrxname
: param.h, palign.cpp, palign.c, amenu.cpp, amenu.c
- pw_userdnamat
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_usermat
: palign.cpp, palign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- pw_usermtrxname
: param.h
- pwint
: palign.cpp, palign.c
- range
: xmenu.h
- rangeNum
: interfac.cpp, interfac.c
- read_matrix()
: ncoils.cpp, read_matrix.c, ncoils.h, main.h, amenu.cpp, amenu.c
- read_matrix_series()
: readmat.cpp, readmat.c, clustalw.h
- read_tree()
: clustalw.h, calctree.cpp, calctree.c
- read_user_matrix()
: readmat.cpp, readmat.c, clustalw.h
- readEMBL()
: ureadseq.c
- readFitch()
: ureadseq.c
- readGenBank()
: ureadseq.c
- readIG()
: ureadseq.c
- readline()
: ureadseq.c
- readLoop()
: ureadseq.c
- readMSF()
: ureadseq.c
- readNBRF()
: ureadseq.c
- readOlsen()
: ureadseq.c
- ReadOneLine
: ureadseq.c
- readPAUPinterleaved()
: ureadseq.c
- readPAUPsequential()
: ureadseq.c
- readPearson()
: ureadseq.c
- readPhylipInterleaved()
: ureadseq.c
- readPhylipSequential()
: ureadseq.c
- readPIR()
: ureadseq.c
- readPlain()
: ureadseq.c
- readSeq()
: ureadseq.h, ureadseq.c
- readSeqFp()
: ureadseq.h, ureadseq.c
- readSeqMain()
: ureadseq.c
- readseqs()
: sequence.cpp, sequence.c, clustalw.h
- readStrider()
: ureadseq.c
- readUWGCG()
: ureadseq.c
- readZuker()
: ureadseq.c
- realloc_aln()
: util.cpp, util.c, clustalw.h
- realloc_seq()
: util.cpp, util.c, clustalw.h
- reduced_gap
: calcgap.cpp, calcgap.c
- reload_alignment()
: xmenu.h
- remove_gap_pos()
: xmenu.h
- reroot()
: calctree.cpp, calctree.c
- res_cat1
: param.h
- res_cat2
: param.h
- res_index()
: sequence.cpp, sequence.c
- reset_align()
: interfac.cpp, interfac.c
- reset_alignments_all
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- reset_alignments_new
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- reset_prf1()
: interfac.cpp, interfac.c
- reset_prf2()
: interfac.cpp, interfac.c
- resize_multi_window()
: xmenu.h
- resize_prf_window()
: xmenu.h
- ResizeWindowProc()
: xmenu.h
- reverse_pass()
: palign.cpp, palign.c
- revision_level
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- RIGHT
: clustalw.h
- right_branch
: trees.cpp, trees.c
- root
: calctree.cpp, calctree.c
- rooted_tree
: calctree.cpp, calctree.c
- RR
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- RSE_ADD2GEL
: enums.h
- RSE_ADD_ALL
: enums.h
- RSE_COC_CB
: enums.h
- RSE_COC_CT
: enums.h
- RSE_COC_LL
: enums.h
- RSE_COC_RM
: enums.h
- RSE_NB
: enums.h
- RSE_PARTIAL_DIGESTION
: enums.h
- RSE_RES_AC
: enums.h
- RSE_RES_CC
: enums.h
- RSE_RES_DD
: enums.h
- RSE_RES_LL
: enums.h
- RSE_RES_OK
: enums.h
- RSE_RES_RB
: enums.h
- RSF
: clustalw.h
- rtrim()
: util.cpp, util.c, clustalw.h
- SAD_ABI1
: enums.h
- SAD_ABI2
: enums.h
- SAD_SEQUENCE
: enums.h
- save_left_branch
: trees.cpp, trees.c
- save_parameters
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- save_right_branch
: trees.cpp, trees.c
- save_set()
: calctree.cpp, calctree.c
- sb1
: palign.cpp, palign.c
- sb2
: palign.cpp, palign.c
- score_arg
: param.h
- SCOREHEIGHT
: xmenu.h
- SCREENMARGIN
: xmenu.h
- SCROLL_TO_END
: SequenceCanvas.cpp
- se1
: palign.cpp, palign.c
- se2
: palign.cpp, palign.c
- sec_struct_mask
: sequence.cpp, sequence.c, interfac.cpp, interfac.c
- sec_struct_mask1
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- sec_struct_mask2
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- SECST
: clustalw.h
- secstroutput_options()
: amenu.cpp, amenu.c
- secstroutput_txt
: amenu.cpp, amenu.c
- select_panel()
: xmenu.h
- seq1
: palign.cpp, palign.c
- seq2
: palign.cpp, palign.c
- SEQ_AA_BACKTRANSLATE
: enums.h
- SEQ_AA_VIEW
: enums.h
- SEQ_AA_VIEW_CONDENSED
: enums.h
- SEQ_AA_VIEW_ORIGINAL
: enums.h
- SEQ_AA_VIEW_REAL
: enums.h
- seq_array
: util.cpp, util.c, trees.cpp, trees.c, showpair.cpp, showpair.c, sequence.cpp, sequence.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, alnscore.cpp, alnscore.c
- SEQ_BOTTOM
: enums.h
- SEQ_COPY_AS
: enums.h
- SEQ_COPY_IMAGE
: enums.h
- SEQ_COPY_RESLUT_AA
: enums.h
- SEQ_COPY_RESLUT_DNA
: enums.h
- SEQ_COPY_TEXT
: enums.h
- SEQ_DELETE_GAP
: enums.h
- SEQ_DELETE_OTHER_GAPS
: enums.h
- SEQ_DOWN
: enums.h
- SEQ_FEAT_HIDE
: enums.h
- SEQ_FEAT_SHOW
: enums.h
- seq_input()
: interfac.cpp, interfac.c, clustalw.h
- SEQ_INSERT_GAP
: enums.h
- SEQ_INSERT_OTHER_GAPS
: enums.h
- SEQ_INSERT_RESTRICTION_SITE_LEFT
: enums.h
- SEQ_INSERT_RESTRICTION_SITE_RIGHT
: enums.h
- SEQ_NEW_FROM_RESLUT_AA
: enums.h
- SEQ_NEW_FROM_RESLUT_DNA
: enums.h
- SEQ_PRINT
: enums.h
- SEQ_SAVE_IMAGE
: enums.h
- SEQ_TOP
: enums.h
- seq_tree
: calctree.cpp, calctree.c
- SEQ_UP
: enums.h
- seq_weight
: util.cpp, util.c, prfalign.cpp, prfalign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- seqalign()
: malign.cpp, malign.c, clustalw.h
- seqchecksum
: ureadseq.h
- seqFileFormat()
: ureadseq.h, ureadseq.c
- seqFileFormatFp()
: ureadseq.h, ureadseq.c
- seqFormat
: sequence.cpp, sequence.c
- SeqGCGCheckSum()
: gcgcheck.cpp, gcgcheck.c, clustalw.h
- seqlen_array
: util.cpp, util.c, trees.cpp, trees.c, showpair.cpp, showpair.c, sequence.cpp, sequence.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, alnscore.cpp, alnscore.c
- seqname
: trees.cpp, trees.c, sequence.cpp, sequence.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- seqno_arg
: param.h
- seqno_range_arg
: param.h
- seqRange
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- SEQS
: xmenu.h
- seqsymbols
: ureadseq.c
- SEQUENCE
: clustalw.h
- SEQUENCECHARMARKUP_BOLD
: SequenceCanvas.h
- SEQUENCECHARMARKUP_INVERT
: SequenceCanvas.h
- SEQUENCECHARMARKUP_MARK
: SequenceCanvas.h
- SEQUENCECHARMARKUP_MONO
: SequenceCanvas.h
- set_align_endgappenalties()
: xmenu.h
- set_aln_mode()
: xmenu.h
- set_ambiguities()
: xmenu.h
- set_blocklen()
: xmenu.h
- set_boot_format()
: xmenu.h
- set_button()
: xmenu.h
- set_case()
: xmenu.h
- set_curve()
: xmenu.h
- set_div_seq()
: xmenu.h
- set_dnamatrix()
: xmenu.h
- set_endgaps()
: xmenu.h
- set_font_size()
: xmenu.h
- set_format()
: xmenu.h
- set_fpres()
: xmenu.h
- set_fres()
: xmenu.h
- set_fs_toggle()
: xmenu.h
- set_gap_dist()
: xmenu.h
- set_ge_penalty()
: xmenu.h
- set_go_penalty()
: xmenu.h
- set_gp()
: xmenu.h
- set_gp_output()
: xmenu.h
- set_header()
: xmenu.h
- set_helix_gp()
: xmenu.h
- set_helix_minus()
: xmenu.h
- set_helix_plus()
: xmenu.h
- set_hyd_penalties()
: xmenu.h
- set_hyd_res()
: xmenu.h
- set_info()
: calctree.cpp, calctree.c
- set_inverted()
: xmenu.h
- set_kimura()
: xmenu.h
- set_ktuple()
: xmenu.h
- set_lengthcutoff()
: xmenu.h
- set_loop_gp()
: xmenu.h
- set_lpres()
: xmenu.h
- set_lres()
: xmenu.h
- set_matrix()
: xmenu.h
- set_neg_matrix()
: xmenu.h
- set_ntrials()
: xmenu.h
- set_optional_param()
: interfac.cpp, interfac.c
- set_orientation()
: xmenu.h
- set_output_clustal()
: xmenu.h
- set_output_fasta()
: xmenu.h
- set_output_gcg()
: xmenu.h
- set_output_gde()
: xmenu.h
- set_output_nbrf()
: xmenu.h
- set_output_nexus()
: xmenu.h
- set_output_order()
: xmenu.h
- set_output_phylip()
: xmenu.h
- set_output_pim()
: xmenu.h
- set_output_tree_clustal()
: xmenu.h
- set_output_tree_distances()
: xmenu.h
- set_output_tree_nexus()
: xmenu.h
- set_output_tree_phylip()
: xmenu.h
- set_pagesize()
: xmenu.h
- set_pref_penalties()
: xmenu.h
- set_pscroll_mode()
: xmenu.h
- set_pw_dnamatrix()
: xmenu.h
- set_pw_ge_penalty()
: xmenu.h
- set_pw_go_penalty()
: xmenu.h
- set_pw_matrix()
: xmenu.h
- set_pw_user_dnamatrix()
: xmenu.h
- set_pw_user_matrix()
: xmenu.h
- set_ran_seed()
: xmenu.h
- set_realign_endgappenalties()
: xmenu.h
- set_residue_exceptions()
: xmenu.h
- set_resize()
: xmenu.h
- set_resno()
: xmenu.h
- set_ruler()
: xmenu.h
- set_save_log()
: xmenu.h
- set_save_paras()
: xmenu.h
- set_score_dnamatrix()
: xmenu.h
- set_score_matrix()
: xmenu.h
- set_score_user_dnamatrix()
: xmenu.h
- set_score_user_matrix()
: xmenu.h
- set_scorecutoff()
: xmenu.h
- set_scorescale()
: xmenu.h
- set_segment_dnamatrix()
: xmenu.h
- set_segment_dnascale()
: xmenu.h
- set_segment_exceptions()
: xmenu.h
- set_segment_matrix()
: xmenu.h
- set_segment_user_dnamatrix()
: xmenu.h
- set_segment_user_matrix()
: xmenu.h
- set_show_segments()
: xmenu.h
- set_snos()
: xmenu.h
- set_ss_output()
: xmenu.h
- set_strand_gp()
: xmenu.h
- set_strand_minus()
: xmenu.h
- set_strand_plus()
: xmenu.h
- set_terminal_gp()
: xmenu.h
- set_toggle()
: xmenu.h
- set_topdiags()
: xmenu.h
- set_tossgaps()
: xmenu.h
- set_transitions()
: xmenu.h
- set_use_ss1()
: xmenu.h
- set_use_ss2()
: xmenu.h
- set_user_dnamatrix()
: xmenu.h
- set_user_matrix()
: xmenu.h
- set_var_penalties()
: xmenu.h
- set_window()
: xmenu.h
- setalign
: param.h
- setbatch
: param.h
- setbootlabels
: param.h
- setbootstrap
: param.h
- setcase
: param.h
- setconvert
: param.h
- setdebug
: param.h
- setdnamatrix
: param.h
- setgapdist
: param.h
- setgapext
: param.h
- setgapopen
: param.h
- sethelixendin
: param.h
- sethelixendout
: param.h
- sethelixgap
: param.h
- sethelp
: param.h
- sethgapres
: param.h
- setinfile
: param.h
- setinteractive
: param.h
- setkimura
: param.h
- setktuple
: param.h
- setloopgap
: param.h
- setmatrix
: param.h
- setmaxdiv
: param.h
- setnegative
: param.h
- setnewtree
: param.h
- setnewtree1
: param.h
- setnewtree2
: param.h
- setnohgap
: param.h
- setnopgap
: param.h
- setnovgap
: param.h
- setnoweights
: param.h
- setoptions
: param.h
- setoutfile
: param.h
- setoutorder
: param.h
- setoutput
: param.h
- setoutputtree
: param.h
- setpairgap
: param.h
- setprofile
: param.h
- setprofile1
: param.h
- setprofile2
: param.h
- setpwdnamatrix
: param.h
- setpwgapext
: param.h
- setpwgapopen
: param.h
- setpwmatrix
: param.h
- setquicktree
: param.h
- setRange()
: xmenu.h
- setrange
: param.h
- sets
: malign.cpp, malign.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- setscore
: param.h
- setsecstr1
: param.h
- setsecstr2
: param.h
- setsecstroutput
: param.h
- setseed
: param.h
- setseqno
: param.h
- setseqno_range
: param.h
- setsequences
: param.h
- setstrandendin
: param.h
- setstrandendout
: param.h
- setstrandgap
: param.h
- setterminalgap
: param.h
- settopdiags
: param.h
- settossgaps
: param.h
- settransweight
: param.h
- settree
: param.h
- settype
: param.h
- setuseendgaps
: param.h
- setusetree
: param.h
- setusetree1
: param.h
- setusetree2
: param.h
- setvgapres
: param.h
- setwindow
: param.h
- SH_CANCEL
: enums.h
- SH_CB_ENZYMES
: enums.h
- SH_CB_ITEMS
: enums.h
- SH_CB_SEQUENCE
: enums.h
- SH_CB_TRANSLATION
: enums.h
- SH_LB
: enums.h
- SH_SEARCH
: enums.h
- SH_TEXT
: enums.h
- SHARED_STORAGE
: TStorage.h
- shift()
: xmenu.h
- show_aln()
: interfac.cpp, interfac.c
- show_pair()
: showpair.cpp, showpair.c, clustalw.h
- show_segment_exceptions()
: xmenu.h
- showaln
: param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- signif
: showpair.cpp, showpair.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- sint
: general.h
- skip_space()
: calctree.cpp, calctree.c
- skipwhitespace
: ureadseq.h
- slopes
: showpair.cpp, showpair.c
- sort_scores()
: xmenu.h
- spanel
: xmenu.h
- SPD_DB
: enums.h
- SPEAK_PAUSE
: enums.h
- SPEAK_PLAY
: enums.h
- SPEAK_STOP
: enums.h
- spec_points
: gp_out.h
- SPLIT_1
: enums.h
- SPLIT_2
: enums.h
- SPLIT_3
: enums.h
- SPLIT_ALIGNMENT
: enums.h
- SPLIT_AMINOACIDS
: enums.h
- sqlite
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE2_TEXT
: mac_sqlite2.h
- sqlite3
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_aggregate_context()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_aggregate_count()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_blob()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_double()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_int()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_int64()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_null()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_parameter_count()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_parameter_index()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_parameter_name()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_text()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_text16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_bind_value()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_busy_handler()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_busy_timeout()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_callback
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_changes()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_clear_bindings()
: mac_sqlite3.h, lin_sqlite3.h
- sqlite3_close()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_collation_needed()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_collation_needed16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_blob()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_bytes()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_bytes16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_count()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_decltype()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_decltype16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_double()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_int()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_int64()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_name()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_name16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_text()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_text16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_column_type()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_commit_hook()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_complete()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_complete16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_context
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_create_collation()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_create_collation16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_create_function()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_create_function16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_data_count()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_db_handle()
: mac_sqlite3.h
- sqlite3_errcode()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_errmsg()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_errmsg16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_exec()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_expired()
: mac_sqlite3.h, lin_sqlite3.h
- sqlite3_finalize()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_free()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_free_table()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_get_autocommit()
: mac_sqlite3.h
- sqlite3_get_auxdata()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_get_table()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_global_recover()
: mac_sqlite3.h, lin_sqlite3.h
- sqlite3_interrupt()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_key()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_last_insert_rowid()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_libversion()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_libversion_number()
: mac_sqlite3.h, lin_sqlite3.h
- sqlite3_mprintf()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_open()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_open16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_prepare()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_prepare16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_progress_handler()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_rekey()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_reset()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_blob()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_double()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_error()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_error16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_int()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_int64()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_null()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_text()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_text16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_text16be()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_text16le()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_result_value()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_set_authorizer()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_set_auxdata()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_sleep()
: mac_sqlite3.h, lin_sqlite3.h
- sqlite3_snprintf()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_step()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_stmt
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_temp_directory
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE3_TEXT
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_total_changes()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_trace()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_transfer_bindings()
: mac_sqlite3.h
- sqlite3_user_data()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_blob()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_bytes()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_bytes16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_double()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_int()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_int64()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_text()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_text16()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_text16be()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_text16le()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_value_type()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_version
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite3_vmprintf()
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_ABORT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_aggregate_context()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_aggregate_count()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_ALTER_TABLE
: mac_sqlite3.h, lin_sqlite3.h
- SQLITE_ANY
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_ARGS
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_ATTACH
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_AUTH
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_bind()
: win_sqlite.h, mac_sqlite2.h
- SQLITE_BLOB
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_BUSY
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_busy_handler()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_busy_timeout()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_callback
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_CANTOPEN
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_changes()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_close()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_commit_hook()
: win_sqlite.h, mac_sqlite2.h
- sqlite_compile()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_complete()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_CONSTRAINT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_COPY
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CORRUPT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_create_aggregate()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_create_function()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_CREATE_INDEX
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TABLE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TEMP_INDEX
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TEMP_TABLE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TEMP_TRIGGER
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TEMP_VIEW
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_TRIGGER
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_CREATE_VIEW
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_decode_binary()
: mac_sqlite2.h
- SQLITE_DELETE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DENY
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DETACH
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DONE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_INDEX
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TABLE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TEMP_INDEX
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TEMP_TABLE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TEMP_TRIGGER
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TEMP_VIEW
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_TRIGGER
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_DROP_VIEW
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_EMPTY
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_encode_binary()
: mac_sqlite2.h
- sqlite_encoding
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_ERROR
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_error_string()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_exec()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_exec_printf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_exec_vprintf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_finalize()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_FLOAT
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_FORMAT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_free_table()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_freemem()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_FULL
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_func
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_function_type()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_get_table()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_get_table_printf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_get_table_vprintf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_IGNORE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_INSERT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_int64
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_INTEGER
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_INTERNAL
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_interrupt()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_INTERRUPT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_IOERR
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_ISO8859
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_last_insert_rowid()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_last_statement_changes()
: win_sqlite.h, mac_sqlite2.h
- sqlite_libencoding()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_libversion()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_LOCKED
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_MISMATCH
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_MISUSE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_mprintf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_NOLFS
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_NOMEM
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_NOTADB
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h
- SQLITE_NOTFOUND
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_NULL
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_NUMERIC
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_OK
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_open()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_open_encrypted()
: win_sqlite.h, mac_sqlite2.h
- SQLITE_PERM
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_PRAGMA
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_progress_handler()
: win_sqlite.h, mac_sqlite2.h
- SQLITE_PROTOCOL
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_RANGE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h
- SQLITE_READ
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_READONLY
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_REINDEX
: mac_sqlite3.h, lin_sqlite3.h
- sqlite_rekey()
: win_sqlite.h, mac_sqlite2.h
- sqlite_reset()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_ROW
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_SCHEMA
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_SELECT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_set_authorizer()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_set_result_double()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_set_result_error()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_set_result_int()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_set_result_string()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_STATIC
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite_step()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_TEXT
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_TOOBIG
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_trace()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_TRANSACTION
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_TRANSIENT
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite_uint64
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_UPDATE
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- sqlite_user_data()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_UTF16
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_UTF16BE
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_UTF16LE
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- SQLITE_UTF8
: win_sqlite3.h, mac_sqlite3.h, lin_sqlite3.h
- sqlite_version
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SQLITE_VERSION
: win_sqlite3.h, win_sqlite.h, mac_sqlite3.h, mac_sqlite2.h, lin_sqlite3.h, lin_sqlite.h
- SQLITE_VERSION_NUMBER
: mac_sqlite3.h, lin_sqlite3.h
- sqlite_vm
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqlite_vmprintf()
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- sqliteErrStr
: win_sqlite.h, mac_sqlite2.h, lin_sqlite.h
- SS
: prfalign.cpp, prfalign.c, palign.cpp, palign.c
- ss_name
: sequence.cpp, sequence.c, interfac.cpp, interfac.c
- ss_name1
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- ss_name2
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- ss_options_menu()
: amenu.cpp, amenu.c
- st
: TStorage.cpp
- STANDARDRADIUS
: PlasmidCanvas.h
- startFind()
: interfac.cpp, interfac.c
- stdsymbols
: ureadseq.c
- STRAND_COPY_35
: enums.h
- STRAND_COPY_53
: enums.h
- STRAND_COPY_BOTH
: enums.h
- strand_end_minus
: param.h, amenu.cpp, amenu.c
- strand_end_penalty
: param.h, amenu.cpp, amenu.c
- strand_end_plus
: param.h, amenu.cpp, amenu.c
- STRAND_NEW_35
: enums.h
- STRAND_NEW_53
: enums.h
- STRAND_NEW_BOTH
: enums.h
- strand_penalty
: param.h, amenu.cpp, amenu.c
- STRARG
: param.h
- Strcasecmp()
: ureadseq.h, ureadseq.c
- stree
: clustalw.h
- stringField
: TGraph.h
- stripspace()
: xmenu.h
- Strncasecmp()
: ureadseq.h, ureadseq.c
- struct_penalties
: sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- struct_penalties1
: prfalign.cpp, prfalign.c, param.h, interfac.cpp, interfac.c
- struct_penalties2
: prfalign.cpp, prfalign.c, param.h, interfac.cpp, interfac.c
- swap()
: xmenu.h
- swgapdnamt
: prfalign.cpp, prfalign.c, palign.cpp, palign.c, matrices.h
- switch_mode()
: xmenu.h
- switch_profiles
: prfalign.cpp, prfalign.c
- TAG_COMPLEMENT
: GenBank.cpp
- tbgap
: palign.cpp, palign.c
- tegap
: palign.cpp, palign.c
- TEMP_STORAGE
: TStorage.h
- text_colors()
: xmenu.h
- TGD_BT_DATA
: enums.h
- TGD_BT_SCALES
: enums.h
- TGD_LB_DATA
: enums.h
- TGD_LB_SCALES
: enums.h
- TGD_OK
: enums.h
- theapp
: main.cpp
- TID_CANCEL
: enums.h
- TID_OK
: enums.h
- TIPC_DIA_LIMIT
: enums.h
- titles
: util.cpp, util.c, sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- TIXML_DEFAULT_ENCODING
: tinyxml.h
- TIXML_ENCODING_LEGACY
: tinyxml.h
- TIXML_ENCODING_UNKNOWN
: tinyxml.h
- TIXML_ENCODING_UTF8
: tinyxml.h
- TIXML_LOG
: tinyxml.h
- TIXML_MAJOR_VERSION
: tinyxml.h
- TIXML_MINOR_VERSION
: tinyxml.h
- TIXML_NO_ATTRIBUTE
: tinyxml.h
- TIXML_OSTREAM
: tinyxml.h
- TIXML_PATCH_VERSION
: tinyxml.h
- TIXML_STRING
: tinyxml.h
- TIXML_SUCCESS
: tinyxml.h
- TIXML_WRONG_TYPE
: tinyxml.h
- TiXmlEncoding
: tinyxml.h
- tkill
: trees.cpp, trees.c
- TM_GC
: TPrimer.h
- TM_SALT
: TPrimer.h
- TM_STANDARD
: TPrimer.h
- tmat
: util.cpp, util.c, trees.cpp, trees.c, showpair.cpp, showpair.c, prfalign.cpp, prfalign.c, palign.cpp, palign.c, malign.cpp, malign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c
- to_lower
: ureadseq.h
- to_upper
: ureadseq.h
- tolowerstr
: ureadseq.c
- tossgaps
: trees.cpp, trees.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- TProteaseArray
: TProteolysis.h
- TProteaseCutArray
: TProteolysis.h
- tracepath()
: palign.cpp, palign.c
- transition()
: trees.cpp, trees.c
- transition_weight
: prfalign.cpp, prfalign.c, param.h, palign.cpp, palign.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- tree
: interfac.cpp, interfac.c, clustalw.cpp, clustalw.c
- TREE_DUMMY
: enums.h
- tree_format_options_menu()
: amenu.cpp, amenu.c
- tree_gap_delete()
: trees.cpp, trees.c
- tree_gaps
: trees.cpp, trees.c
- treeptr
: clustalw.h
- true
: ureadseq.h
- TRUE
: general.h
- TSD
: enums.h
- TSD_CANCEL
: enums.h
- TSD_OK
: enums.h
- TT_ITEM
: PlasmidCanvas.h
- TT_NONE
: PlasmidCanvas.h
- TT_ORF
: PlasmidCanvas.h
- TT_RS
: PlasmidCanvas.h
- TVE_CANCEL
: enums.h
- TVE_DEL_ENZYME
: enums.h
- TVE_DEL_FROM_GROUP
: enums.h
- TVE_EDIT_PROTEASE
: enums.h
- TVE_EN_ADD_EN
: enums.h
- TVE_EN_ADD_GR
: enums.h
- TVE_EN_ADD_TO_GR
: enums.h
- TVE_EN_ADD_TO_NEW_GR
: enums.h
- TVE_EN_DEL_EN
: enums.h
- TVE_EN_DEL_GR
: enums.h
- TVE_EN_IMPORT_REBASE
: enums.h
- TVE_I_ADD
: enums.h
- TVE_I_CLR
: enums.h
- TVE_I_COL
: enums.h
- TVE_I_DEL
: enums.h
- TVE_ICHOICE
: enums.h
- TVE_ILIST
: enums.h
- TVE_IMPORT
: enums.h
- TVE_LB_CE
: enums.h
- TVE_LB_GE
: enums.h
- TVE_LB_GR
: enums.h
- TVE_NEW_ENZYME
: enums.h
- TVE_NEW_PROTEASE
: enums.h
- TVE_OK
: enums.h
- TVE_PROTEASE_LIST
: enums.h
- TVS
: TGraph.h
- two_way_split()
: trees.cpp, trees.c
- two_way_split_nexus()
: trees.cpp, trees.c
- txt()
: main.h, main.cpp
- TYPE_ALIGNMENT
: main.h
- TYPE_AMINO_ACIDS
: main.h
- type_arg
: param.h
- TYPE_FRAGMENT
: main.h
- TYPE_MISC
: main.h
- TYPE_PRIMER
: main.h
- TYPE_SEQUENCE
: main.h
- TYPE_VECTOR
: main.h
- UGLY_MENU_UPDATE
: MyFrame.cpp
- uint
: main.h
- ungetline()
: ureadseq.c
- UNKNOWN
: clustalw.h
- upstr()
: util.cpp, util.c, clustalw.h
- UREADSEQ_G
: ureadseq.c
- URLTEXT_DUMMY
: enums.h
- use_ambiguities
: trees.cpp, trees.c, param.h, amenu.cpp, amenu.c
- USE_DIGITS
: global.h
- use_endgaps
: param.h, calcgap.cpp, calcgap.c, amenu.cpp, amenu.c
- use_ss1
: prfalign.cpp, prfalign.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- use_ss2
: prfalign.cpp, prfalign.c, param.h, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- use_tree1_file
: interfac.cpp, interfac.c
- use_tree2_file
: interfac.cpp, interfac.c
- use_tree_file
: interfac.cpp, interfac.c
- usemenu
: trees.cpp, trees.c, sequence.cpp, sequence.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, calctree.cpp, calctree.c, amenu.cpp, amenu.c
- USEMYSQL
: TStorage.h
- USER
: clustalw.h
- user_mat()
: interfac.cpp, interfac.c, clustalw.h
- user_mat_series()
: interfac.cpp, interfac.c, clustalw.h
- user_series
: readmat.cpp, readmat.c, prfalign.cpp, prfalign.c, clustalw.cpp, clustalw.c
- userdnamat
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- usermat
: prfalign.cpp, prfalign.c, interfac.cpp, interfac.c, clustalw.cpp, clustalw.c, amenu.cpp, amenu.c
- usermatseries
: readmat.cpp, readmat.c, clustalw.cpp, clustalw.c
- usermtrxname
: param.h
- USING_SQLITE_3
: TStorage.h
- USLETTER
: xmenu.h
- warning()
: clustalw.h, amenu.cpp, amenu.c
- white_on_black()
: xmenu.h
- wind_gap
: showpair.cpp, showpair.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- window
: showpair.cpp, showpair.c, interfac.cpp, interfac.c, amenu.cpp, amenu.c
- write_ps_file()
: xmenu.h
- writeSeq()
: ureadseq.h, ureadseq.c
- WX_DECLARE_OBJARRAY()
: main.h
- WX_DECLARE_STRING_HASH_MAP()
: main.h, FindSequenceDialog.h
- WX_DEFINE_ARRAY()
: TUndo.h, main.h
- WX_DEFINE_OBJARRAY()
: main.cpp
- wxPD_ALL
: main.h
- wxStringInsert()
: main.h, main.cpp
Generated on Fri Aug 11 16:19:50 2006 for GENtle by
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