malign.c File Reference

#include <stdio.h>
#include <string.h>
#include <ctype.h>
#include <stdlib.h>
#include "clustalw.h"

Functions
sint	malign (sint istart, char *phylip_name)
sint	seqalign (sint istart, char *phylip_name)
sint	palign1 (void)
float	countid (sint s1, sint s2)
sint	palign2 (char *p1_tree_name, char *p2_tree_name)
Variables
double **	tmat
Boolean	no_weights
sint	debug
sint	max_aa
sint	nseqs
sint	profile1_nseqs
sint	nsets
sint **	sets
sint	divergence_cutoff
sint *	seq_weight
sint	output_order
sint *	output_index
Boolean	distance_tree
char	seqname []
sint *	seqlen_array
char **	seq_array

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Function Documentation

float countid (  sint  s1, sint  s2 )

sint malign (  sint  istart, char *  phylip_name )

sint palign1 (  void   )

sint palign2 (  char *  p1_tree_name, char *  p2_tree_name )

sint seqalign (  sint  istart, char *  phylip_name )

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Variable Documentation

sint debug

Boolean distance_tree

sint divergence_cutoff

sint max_aa

Boolean no_weights

sint nseqs

sint nsets

sint * output_index

sint output_order

sint profile1_nseqs

char** seq_array

sint* seq_weight

sint* seqlen_array

char seqname[]

sint** sets

double** tmat

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