Main Page | Namespace List | Class Hierarchy | Class List | Directories | File List | Class Members | File Members

malign.cpp File Reference

#include <stdio.h>
#include <string.h>
#include <ctype.h>
#include <stdlib.h>
#include "clustalw.h"

Functions

sint malign (sint istart, char *phylip_name)
sint seqalign (sint istart, char *phylip_name)
sint palign1 (void)
float countid (sint s1, sint s2)
sint palign2 (char *p1_tree_name, char *p2_tree_name)

Variables

double ** tmat
Boolean no_weights
sint debug
sint max_aa
sint nseqs
sint profile1_nseqs
sint nsets
sint ** sets
sint divergence_cutoff
sint * seq_weight
sint output_order
sint * output_index
Boolean distance_tree
char seqname []
sint * seqlen_array
char ** seq_array

Function Documentation

float countid sint  s1,
sint  s2
 

sint malign sint  istart,
char *  phylip_name
 

sint palign1 void   ) 
 

sint palign2 char *  p1_tree_name,
char *  p2_tree_name
 

sint seqalign sint  istart,
char *  phylip_name
 


Variable Documentation

sint debug
 

Boolean distance_tree
 

sint divergence_cutoff
 

sint max_aa
 

Boolean no_weights
 

sint nseqs
 

sint nsets
 

sint * output_index
 

sint output_order
 

sint profile1_nseqs
 

char** seq_array
 

sint* seq_weight
 

sint* seqlen_array
 

char seqname[]
 

sint** sets
 

double** tmat
 


Generated on Fri Aug 11 16:19:42 2006 for GENtle by  doxygen 1.4.1