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Functions |
static Boolean | commentline (char *line) |
void | init_matrix (void) |
sint | get_matrix (short *matptr, short *xref, sint matrix[NUMRES][NUMRES], Boolean neg_flag, sint scale) |
sint | read_matrix_series (char *filename, short *usermat, short *xref) |
sint | read_user_matrix (char *filename, short *usermat, short *xref) |
int | getargs (char *inline1, char *args[], int max) |
Variables |
char * | amino_acid_codes |
sint | gap_pos1 |
sint | gap_pos2 |
sint | max_aa |
short | def_dna_xref [] |
short | def_aa_xref [] |
sint | mat_avscore |
sint | debug |
Boolean | dnaflag |
Boolean | user_series |
UserMatSeries | matseries |
short | usermatseries [MAXMAT][NUMRES][NUMRES] |
short | aa_xrefseries [MAXMAT][NUMRES+1] |