readmat.cpp File Reference

#include <stdio.h>
#include <math.h>
#include <stdlib.h>
#include <string.h>
#include <ctype.h>
#include "clustalw.h"
#include "matrices.h"

Functions
static Boolean	commentline (char *line)
void	init_matrix (void)
sint	get_matrix (short *matptr, short *xref, sint matrix[NUMRES][NUMRES], Boolean neg_flag, sint scale)
sint	read_matrix_series (char *filename, short *usermat, short *xref)
sint	read_user_matrix (char *filename, short *usermat, short *xref)
int	getargs (char *inline1, char *args[], int max)
Variables
char *	amino_acid_codes
sint	gap_pos1
sint	gap_pos2
sint	max_aa
short	def_dna_xref []
short	def_aa_xref []
sint	mat_avscore
sint	debug
Boolean	dnaflag
Boolean	user_series
UserMatSeries	matseries
short	usermatseries [MAXMAT][NUMRES][NUMRES]
short	aa_xrefseries [MAXMAT][NUMRES+1]

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Function Documentation

static Boolean commentline (  char *  line  )  [static]

sint get_matrix (  short *  matptr, short *  xref, sint  matrix[NUMRES][NUMRES], Boolean  neg_flag, sint  scale )

int getargs (  char *  inline1, char *  args[], int  max )

void init_matrix (  void   )

sint read_matrix_series (  char *  filename, short *  usermat, short *  xref )

sint read_user_matrix (  char *  filename, short *  usermat, short *  xref )

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Variable Documentation

short aa_xrefseries[MAXMAT][NUMRES+1]

char* amino_acid_codes

sint debug

short def_aa_xref[]

short def_dna_xref[]

Boolean dnaflag

sint gap_pos1

sint gap_pos2

sint mat_avscore

UserMatSeries matseries

sint max_aa

Boolean user_series

short usermatseries[MAXMAT][NUMRES][NUMRES]

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