Main Page | Namespace List | Class Hierarchy | Class List | Directories | File List | Class Members | File Members

readmat.cpp File Reference

#include <stdio.h>
#include <math.h>
#include <stdlib.h>
#include <string.h>
#include <ctype.h>
#include "clustalw.h"
#include "matrices.h"

Functions

static Boolean commentline (char *line)
void init_matrix (void)
sint get_matrix (short *matptr, short *xref, sint matrix[NUMRES][NUMRES], Boolean neg_flag, sint scale)
sint read_matrix_series (char *filename, short *usermat, short *xref)
sint read_user_matrix (char *filename, short *usermat, short *xref)
int getargs (char *inline1, char *args[], int max)

Variables

char * amino_acid_codes
sint gap_pos1
sint gap_pos2
sint max_aa
short def_dna_xref []
short def_aa_xref []
sint mat_avscore
sint debug
Boolean dnaflag
Boolean user_series
UserMatSeries matseries
short usermatseries [MAXMAT][NUMRES][NUMRES]
short aa_xrefseries [MAXMAT][NUMRES+1]

Function Documentation

static Boolean commentline char *  line  )  [static]
 

sint get_matrix short *  matptr,
short *  xref,
sint  matrix[NUMRES][NUMRES],
Boolean  neg_flag,
sint  scale
 

int getargs char *  inline1,
char *  args[],
int  max
 

void init_matrix void   ) 
 

sint read_matrix_series char *  filename,
short *  usermat,
short *  xref
 

sint read_user_matrix char *  filename,
short *  usermat,
short *  xref
 


Variable Documentation

short aa_xrefseries[MAXMAT][NUMRES+1]
 

char* amino_acid_codes
 

sint debug
 

short def_aa_xref[]
 

short def_dna_xref[]
 

Boolean dnaflag
 

sint gap_pos1
 

sint gap_pos2
 

sint mat_avscore
 

UserMatSeries matseries
 

sint max_aa
 

Boolean user_series
 

short usermatseries[MAXMAT][NUMRES][NUMRES]
 


Generated on Fri Aug 11 16:19:42 2006 for GENtle by  doxygen 1.4.1