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Functions |
static void | make_p_ptrs (sint *tptr, sint *pl, sint naseq, sint l) |
static void | make_n_ptrs (sint *tptr, sint *pl, sint naseq, sint len) |
static void | put_frag (sint fs, sint v1, sint v2, sint flen) |
static sint | frag_rel_pos (sint a1, sint b1, sint a2, sint b2) |
static void | des_quick_sort (sint *array1, sint *array2, sint array_size) |
static void | pair_align (sint seq_no, sint l1, sint l2) |
void | show_pair (sint istart, sint iend, sint jstart, sint jend) |
Variables |
sint * | seqlen_array |
char ** | seq_array |
sint | dna_ktup |
sint | dna_window |
sint | dna_wind_gap |
sint | dna_signif |
sint | prot_ktup |
sint | prot_window |
sint | prot_wind_gap |
sint | prot_signif |
sint | nseqs |
Boolean | dnaflag |
double ** | tmat |
sint | max_aa |
sint | max_aln_length |
static sint | next |
static sint | curr_frag |
static sint | maxsf |
static sint | vatend |
static sint ** | accum |
static sint * | diag_index |
static char * | slopes |
sint | ktup |
sint | window |
sint | wind_gap |
sint | signif |
sint * | displ |
sint * | zza |
sint * | zzb |
sint * | zzc |
sint * | zzd |
Boolean | percent |