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showpair.cpp File Reference

#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <math.h>
#include "clustalw.h"

Functions

static void make_p_ptrs (sint *tptr, sint *pl, sint naseq, sint l)
static void make_n_ptrs (sint *tptr, sint *pl, sint naseq, sint len)
static void put_frag (sint fs, sint v1, sint v2, sint flen)
static sint frag_rel_pos (sint a1, sint b1, sint a2, sint b2)
static void des_quick_sort (sint *array1, sint *array2, sint array_size)
static void pair_align (sint seq_no, sint l1, sint l2)
void show_pair (sint istart, sint iend, sint jstart, sint jend)

Variables

sint * seqlen_array
char ** seq_array
sint dna_ktup
sint dna_window
sint dna_wind_gap
sint dna_signif
sint prot_ktup
sint prot_window
sint prot_wind_gap
sint prot_signif
sint nseqs
Boolean dnaflag
double ** tmat
sint max_aa
sint max_aln_length
static sint next
static sint curr_frag
static sint maxsf
static sint vatend
static sint ** accum
static sint * diag_index
static char * slopes
sint ktup
sint window
sint wind_gap
sint signif
sint * displ
sint * zza
sint * zzb
sint * zzc
sint * zzd
Boolean percent

Function Documentation

static void des_quick_sort sint *  array1,
sint *  array2,
sint  array_size
[static]
 

static sint frag_rel_pos sint  a1,
sint  b1,
sint  a2,
sint  b2
[static]
 

static void make_n_ptrs sint *  tptr,
sint *  pl,
sint  naseq,
sint  len
[static]
 

static void make_p_ptrs sint *  tptr,
sint *  pl,
sint  naseq,
sint  l
[static]
 

static void pair_align sint  seq_no,
sint  l1,
sint  l2
[static]
 

static void put_frag sint  fs,
sint  v1,
sint  v2,
sint  flen
[static]
 

void show_pair sint  istart,
sint  iend,
sint  jstart,
sint  jend
 


Variable Documentation

sint** accum [static]
 

sint curr_frag [static]
 

sint* diag_index [static]
 

sint* displ
 

sint dna_ktup
 

sint dna_signif
 

sint dna_wind_gap
 

sint dna_window
 

Boolean dnaflag
 

sint ktup
 

sint max_aa
 

sint max_aln_length
 

sint maxsf [static]
 

sint next [static]
 

sint nseqs
 

Boolean percent
 

sint prot_ktup
 

sint prot_signif
 

sint prot_wind_gap
 

sint prot_window
 

char** seq_array
 

sint* seqlen_array
 

sint signif
 

char* slopes [static]
 

double** tmat
 

sint vatend [static]
 

sint wind_gap
 

sint window
 

sint* zza
 

sint * zzb
 

sint * zzc
 

sint * zzd
 


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