util.c File Reference

#include <stdlib.h>
#include <stdio.h>
#include <string.h>
#include <errno.h>
#include <stdarg.h>
#include <ctype.h>
#include "clustalw.h"

Functions
void *	ckalloc (size_t bytes)
void *	ckrealloc (void *ptr, size_t bytes)
void *	ckfree (void *ptr)
char *	rtrim (char *str)
char *	blank_to_ (char *str)
char *	upstr (char *str)
char *	lowstr (char *str)
void	getstr (char *instr, char *outstr)
double	getreal (char *instr, double minx, double maxx, double def)
int	getint (char *instr, int minx, int maxx, int def)
void	do_system (void)
Boolean	linetype (char *line, char *code)
Boolean	keyword (char *line, char *code)
Boolean	blankline (char *line)
void	get_path (char *str, char *path)
void	alloc_aln (sint nseqs)
void	realloc_aln (sint first_seq, sint nseqs)
void	free_aln (sint nseqs)
void	alloc_seq (sint seq_no, sint length)
void	realloc_seq (sint seq_no, sint length)
void	free_seq (sint seq_no)
Variables
char **	seq_array
sint *	seqlen_array
char **	names
char **	titles
sint *	output_index
sint *	seq_weight
double **	tmat

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Function Documentation

void alloc_aln (  sint  nseqs  )

void alloc_seq (  sint  seq_no, sint  length )

char* blank_to_ (  char *  str  )

Boolean blankline (  char *  line  )

void* ckalloc (  size_t  bytes  )

void* ckfree (  void *  ptr  )

void* ckrealloc (  void *  ptr, size_t  bytes )

void do_system (  void   )

void free_aln (  sint  nseqs  )

void free_seq (  sint  seq_no  )

void get_path (  char *  str, char *  path )

int getint (  char *  instr, int  minx, int  maxx, int  def )

double getreal (  char *  instr, double  minx, double  maxx, double  def )

void getstr (  char *  instr, char *  outstr )

Boolean keyword (  char *  line, char *  code )

Boolean linetype (  char *  line, char *  code )

char* lowstr (  char *  str  )

void realloc_aln (  sint  first_seq, sint  nseqs )

void realloc_seq (  sint  seq_no, sint  length )

char* rtrim (  char *  str  )

char* upstr (  char *  str  )

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Variable Documentation

char** names

sint* output_index

char** seq_array

sint* seq_weight

sint* seqlen_array

char ** titles

double** tmat

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